Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00894 ATGGAACCAGAAGACTGGGATTTGAGCGCCGAAGACCTCGATTCCCTTGAAAGAGACGCTTTTCAGAAGATTGCTCAACTCCGCTCCAACCCTCCTCCTCCTTCAAACCCCTCTACCGCTTCACATTTTCAAAGAGTTGATGCTTTGCCTCAAGGAGCTAGAACACTCCCTCACTCATTAGTGAAACCAGGGACAACAAACAACACTAACAAGAATGAGCAGCATTTTAAAGAATTGATTAAAGCTTCTGTCAAATTTTTTCTTCATTCAAGTGGAAATGTTGCAGCAAAATTTCAATATGATCAGGTAATAGTGGCTGCTTTTAGAAGAATCCCTAAATCTACTTGGAATGCTAAAGAAAGGTTATGGATTTTCCCTTTATCTTCCTTGTCAGAAGCAGAAAAGGTTCTTAGAGAAGTATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAGCGTGCTATTGCTGCTGCCACTTCTGTCCCTGATCTTCGAGATCGGTATGATAAGATCCCTGACTATGTTGAAACAAAGCTTTTGCCATTTCAGCGAGATGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTTCTGTAGCAGCATGCGTTCAGGATTCATGGCCCGTTCTCATTCTTGCGCCATCTGCATTACGATTACAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGCGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTCCAAGTGCCAAAAACCGCATTCATCTGGATGGACTGTTCAACATTATCTCATATGACATGGTGGCAAAGCTACAAAATACGCTTATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCTCACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTAAATATGCAATTTTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAGTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTCGAAGGCTTAAGAAGGATGTTCTTTCTGAACTCCCTGTTAAGCGTAGGCAACAAGTCTTCCTAGACTTGGCCGACAAGGACATGAAGCAAATTAATGCTCTATTTCGCGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGTTGAATCACTCAAGTTTACTCAAAAGAATGTTATTAACAAGATTTATACTGATTCTGCTGAAGCCAAGATTCCAGCTGTTCTTGATTATCTTGGAACTGTAATCGAGGCAGGTTGCAAGTTTCTTATATTTGCTCACCATCTATCAATGATTGATGCAATACACGAGTTTCTTCTTAAAAAAAAGGTTGGTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAGTTGGTTACAGAGTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATCAAAGCCGGAGGTGTCGGGTTAACATTGACCGCTGCCAGCACCGTCCTCTTTGCAGAATTGTCCTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGTGTTCATAGAATTGGACAGGTGTCTTCGGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATGTGGGACGTAGTACAAGGCAAACTGGACAATTTGGGACAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAGCCGCTATTGAGAAGCCCTGCAAAGTACTTAAAGGTCTCAGATGATCAACCGGCATTGAGAAGCCCTGCAAAGCAGAAAACTCTTGATCATTTCGTCAGAAGATGTGACAACAGCACGAGTGGATTGGAACATCAGTCATCCCCCAAACGTCCCCGATACTGA 2079 0.418 MEPEDWDLSAEDLDSLERDAFQKIAQLRSNPPPPSNPSTASHFQRVDALPQGARTLPHSLVKPGTTNNTNKNEQHFKELIKASVKFFLHSSGNVAAKFQYDQVIVAAFRRIPKSTWNAKERLWIFPLSSLSEAEKVLREVSGYNVQVENLDPLVQRAIAAATSVPDLRDRYDKIPDYVETKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAISVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSPSAKNRIHLDGLFNIISYDMVAKLQNTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEEVESLKFTQKNVINKIYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLSMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVLFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIMWDVVQGKLDNLGQMLDGHENTLKVSDDQPLLRSPAKYLKVSDDQPALRSPAKQKTLDHFVRRCDNSTSGLEHQSSPKRPRY 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00894 692 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 679 - -
Vivi1g00894 692 Coils Coil 434 454 - -
Vivi1g00894 692 FunFam Chromatin remodeling factor18 155 429 - -
Vivi1g00894 692 Pfam Helicase conserved C-terminal domain 483 591 IPR001650 -
Vivi1g00894 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 638 IPR027417 -
Vivi1g00894 692 FunFam Chromatin remodeling factor18 440 687 - -
Vivi1g00894 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 399 IPR027417 -
Vivi1g00894 692 Gene3D - 445 679 IPR027417 -
Vivi1g00894 692 ProSiteProfiles HARP domain profile. 76 152 IPR010003 -
Vivi1g00894 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 483 634 IPR001650 -
Vivi1g00894 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 363 IPR014001 -
Vivi1g00894 692 CDD SF2_C_SNF 478 602 - -
Vivi1g00894 692 Pfam SNF2-related domain 196 452 IPR000330 GO:0005524|GO:0140658
Vivi1g00894 692 CDD DEXHc_HARP_SMARCAL1 182 405 - -
Vivi1g00894 692 SMART helicmild6 508 591 IPR001650 -
Vivi1g00894 692 SMART ultradead3 178 371 IPR014001 -
Vivi1g00894 692 Gene3D - 155 430 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00894 Vivi-Chr1 19150656 19158580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00894 462 609 RAD5 or RAD16-like Gene Family AT1G05120 30.263 1.62e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g00894 SNF2_N 3.5e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00894 K14440 - gmx:100797654 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00894 1 19150656 19158580 Vivi1g00894 1 19150656 19158580 ECH
Vivi1g00894 1 19150656 19158580 Vivi5g03857 5 133425384 133426956 PCT