Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00893 ATGGGGCAAGAAGTGGTTTTATTGGGTTATCATTTGAGTATGTTTGTGGTAAGAGTTAAGATTGCACTTGCAGAGAAAGGTGTCAAGTATGAGTACAAGGAAGAAGATCTTGTCCACACCAAGAGTGAATTGCTTCTGCAGATGAACCCAGTTCACAAGAAAGTCCCTGTCCTGATCCATAGTGGGAAGCCCATTTCGGAATCTCGCATTATTCTTGAGTACATTGATGAGGTTTGGAAGGATCAAACTCCATTGCTGTCCACTGATCCTTATCAAAGAGCCCATGCTAGATTCTGGGCTGATTTTTTTGATAATAAGGTGCATGAGGTTGCAAAGAAGATATGGACTGGAAAGGTGGATGAACTTGAGAAAGAAAAGAAGGAGTTGATAGAGAATTTGAAAAAAATAGAAGAGGTTCTTGGGGAAAACCTATATTTTGGGGGAGACACATTTGGGTTTCTTGATATTGCAATAATTCCATTTTATAAATGGTTTTCAACTTATGAGGCTGTGGGCAAATTGAAGTTAGAGTGTCCAAAACTCATTGAATGGGGAAAGAGGTGTTTGGAGAGAGAAAGTGTGTCCAAATTTCTGTCGGATGAAAAGGATGTCTATGAGTTTGTTTTGATGTACAGAAAATTAATTGGGTTGGATTAG 657 0.3896 MGQEVVLLGYHLSMFVVRVKIALAEKGVKYEYKEEDLVHTKSELLLQMNPVHKKVPVLIHSGKPISESRIILEYIDEVWKDQTPLLSTDPYQRAHARFWADFFDNKVHEVAKKIWTGKVDELEKEKKELIENLKKIEEVLGENLYFGGDTFGFLDIAIIPFYKWFSTYEAVGKLKLECPKLIEWGKRCLERESVSKFLSDEKDVYEFVLMYRKLIGLD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00893 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 205 IPR045073 -
Vivi1g00893 218 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Vivi1g00893 218 Coils Coil 112 139 - -
Vivi1g00893 218 FunFam Glutathione S-transferase U20 89 218 - -
Vivi1g00893 218 FunFam Tau class glutathione S-transferase 1 88 - -
Vivi1g00893 218 SFLD Glutathione Transferase (cytosolic) 2 214 IPR040079 -
Vivi1g00893 218 SFLD Main.3: Omega- and Tau-like 2 214 IPR045073 -
Vivi1g00893 218 CDD GST_C_Tau 90 209 IPR045074 GO:0004364|GO:0006749
Vivi1g00893 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Vivi1g00893 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 207 IPR010987 -
Vivi1g00893 218 CDD GST_N_Tau 5 79 - -
Vivi1g00893 218 Gene3D - 89 218 - -
Vivi1g00893 218 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
Vivi1g00893 218 Gene3D Glutaredoxin 1 88 - -
Vivi1g00893 218 Pfam Glutathione S-transferase, C-terminal domain 125 184 - -
Vivi1g00893 218 Pfam Glutathione S-transferase, N-terminal domain 8 77 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00893 Vivi-Chr1 19133093 19134414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00893 1 218 Glutathione S-transferase Gene Family AT1G17180 56.364 2.67e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00893 K00799 - gmx:100781460 337.421