Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00891 ATGGAAACAAAGGTAGAGGAGATGAAGAAAGAGAATCAGATCTTAAGATCTATGTTAAATCAAGTAACTCAACACTATGCACTTCTTCACACTCAATACTTAACCGTGATGCAGCAACAGAAGCAACAATCTTCTACATCACCTGATAAAATCAATAAACAAATAATAGAGGAGGATCCAACATCTGAGTTAGCTTCTTGCAGAAAAAAAGGTAGAGTGTCCATTAGGGCACCATCAAATTTCTCATTGATGAGTGATGGGTGTAGATGGAGAAAGTATGGACAAAAGACATCAAAGGTTAATCCATGTCCCCGGGCCTACTTTCGTTGCAATATGGGAGAAACAACACCATGTCCGGTTCGTAAGCAGGTTCAAAGATGTTCGGTTGATGAGACAGTTTTCATCGCAACCTATGAAGGAAATCATAACCATTCCCTTCCACCAGAAGCCAGGTTGACAGCAAACACAACATCAGCAGCATTAAGCATGTTTCTCTCTGGTTCAACCACCAGTTTACATGGCAGCACTATCTCAAATCCATGCCTCTTCTCTCCATCACCATCATCCTCATCATCATCTAGTATTTCTTCCACCTCCACTGGCTTGTCTACTTACTATTCATATGCATCATCATGTCCCACAATAACATTGGACTTAACTCAACCCTCTACCAACTTCTTCAAATCTCAAACACCTATTTATCCAAACCAGTACTACAATCATCAATCTCAAGAGGGATTGTGTTTGTCTTCTAAGCTTTCAAATGCCATGATACCAGAGAAAAACGTTCCCTTGATGGATGGTGTGATTGCAGCTATAATAAAGGATCCTTCTATTAAGGCAGCATTAGATGCAGCTGTTTCTTCACTCACTGGAGTAGTGTTGCATCAGTGA 894 0.4038 METKVEEMKKENQILRSMLNQVTQHYALLHTQYLTVMQQQKQQSSTSPDKINKQIIEEDPTSELASCRKKGRVSIRAPSNFSLMSDGCRWRKYGQKTSKVNPCPRAYFRCNMGETTPCPVRKQVQRCSVDETVFIATYEGNHNHSLPPEARLTANTTSAALSMFLSGSTTSLHGSTISNPCLFSPSPSSSSSSSISSTSTGLSTYYSYASSCPTITLDLTQPSTNFFKSQTPIYPNQYYNHQSQEGLCLSSKLSNAMIPEKNVPLMDGVIAAIIKDPSIKAALDAAVSSLTGVVLHQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00891 297 Gene3D WRKY domain 69 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00891 297 ProSiteProfiles WRKY domain profile. 79 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00891 297 Coils Coil 5 25 - -
Vivi1g00891 297 SMART WRKY_cls 84 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00891 297 SUPERFAMILY WRKY DNA-binding domain 79 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00891 297 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 291 IPR044810 GO:0003700
Vivi1g00891 297 Pfam WRKY DNA -binding domain 86 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00891 Vivi-Chr1 19113179 19117797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00891 69 221 WRKY Transcription Factor Family AT4G04450 52.903 1.44e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g00891 WRKY 5.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00891 - - psat:127138760 475.322