Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00890 ATGCTGTTGCTAGCTACAAAAATGGAAGCAAAAGTTGGACTGAAAAAATTGCTACAAGGTGAAGAAGTACTATATAATAAATATCCTGTAGGACTTGGATGCAGTGATCTGAGTTTGAGTCTGAATAATAATAACAACAACTCAGAAGAGCTTATCCAGAACCAAGAACAGCCTATCCCCTTACTCAAAGTAGGATGGATGGAAACAAAGGTAGAGGAGATGAAGAAAGAGAATCAGATCTTAAGATCTATGTTAAATCAAGTAACTCAACACTATGCACTTCTTCACACTCAATACTTAACCGTGATGCAGCAACAGAAGCAACAATCTTCTACATCACCTGATAAAATCAATAAACAAATAATAGAGGAGGATCCAACATCTGAGTTAGCTTCTTGCAGAAAAAAAGGTAGAGTGTCCATTAGGGCACCATCAAATTTCTCATTGATGAGTGATGGGTGTAGATGGAGAAAGTATGGACAAAAGACATCAAAGGTTAATCCATGTCCCCGGGCCTACTTTCGTTGCAATATGGGAGAAACAACACCATGTCCGGTTCGTAAGCAGGTTCAAAGATGTTCGGTTGATGAGACAGTTTTCATCGCAACCTATGAAGGAAATCATAACCATTCCCTTCCACCAGAAGCCAGGTTGACAGCAAACACAACATCAGCAGCATTAAGCATGTTTCTCTCTGGTTCAACCACCAGTTTACATGGCAGCACTATCTCAAATCCATGCCTCTTCTCTCCATCACCATCATCCTCATCATCATCTAGTATTTCTTCCACCTCCACTGGCTTGTCTACTTACTATTCATATGCATCATCATGTCCCACAATAACATTGGACTTAACTCAACCCTCTACCAACTTCTTCAAATCTCAAACACCTATTTATCCAAACCAGTACTACAATCATCAATCTCAAGAGGGATTGTGTTTGTCTTCTAAGCTTTCAAATGCCATGATACCAGAGAAAAACGTTCCCTTGATGGATGGTGTGATTGCAGCTATAATAAAGGATCCTTCTATTAAGGCAGCATTAGATGCAGCTGTTTCTTCACTCACTGGAGTAGTGTTGCATCAGTGA 1092 0.3984 MLLLATKMEAKVGLKKLLQGEEVLYNKYPVGLGCSDLSLSLNNNNNNSEELIQNQEQPIPLLKVGWMETKVEEMKKENQILRSMLNQVTQHYALLHTQYLTVMQQQKQQSSTSPDKINKQIIEEDPTSELASCRKKGRVSIRAPSNFSLMSDGCRWRKYGQKTSKVNPCPRAYFRCNMGETTPCPVRKQVQRCSVDETVFIATYEGNHNHSLPPEARLTANTTSAALSMFLSGSTTSLHGSTISNPCLFSPSPSSSSSSSISSTSTGLSTYYSYASSCPTITLDLTQPSTNFFKSQTPIYPNQYYNHQSQEGLCLSSKLSNAMIPEKNVPLMDGVIAAIIKDPSIKAALDAAVSSLTGVVLHQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00890 363 Coils Coil 71 91 - -
Vivi1g00890 363 SUPERFAMILY WRKY DNA-binding domain 145 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00890 363 Gene3D WRKY domain 135 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00890 363 SMART WRKY_cls 150 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00890 363 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 357 IPR044810 GO:0003700
Vivi1g00890 363 Pfam WRKY DNA -binding domain 152 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00890 363 ProSiteProfiles WRKY domain profile. 145 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00890 Vivi-Chr1 19112962 19117800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00890 135 287 WRKY Transcription Factor Family AT4G04450 52.903 8.22e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g00890 WRKY 7.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00890 - - psat:127138760 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01065 4 31988424 31995089 Vivi1g00890 1 19112962 19117800 PCT