Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00882 ATGGAAACATCAAAACAAATTGATGTTCATCATCAAACTCAATCATCTTCATCTTCATCTTCTTCCATAGATAGTAACAATTATAATTATCCTTCTGCAATCTCAAGTCTCAAAACAACTGATTTAAGCACCGATCTCAAACTCGGTCTTAGCATCTCTCCATCTTCTCAATCTCAATTACCATTCAATTCAACCACAACCTCAAAGGAAGAAACACTTGATTGGCCACCAATTAATAAATCCATATTGAGAAGAAACACTTTGGCTGAAAAACAAAACCATAGTATTATTCAAAGACAAAGATCTTTGTTTGTTAAGGTTTATATGGAAGGAATCCCAATTGGAAGAAAACTAAATCTCTTGGAACATCATAGTTATGATGAACTTGTTAAAGCTCTTTGTCATATGTTTAGGACAATCATTCTCTGTCCTAATTCGCAACCACTAAATTCGTGGAATTTTCATGTTCTAACATACGAAGATCAAGAAGGAGACTGGATGATGGTCGGAGATGTCCCTTGGGAGATGTTTTTGTCAAATGTGAAGAGGCTGAAGATCACAAGAGCTGATAACTGCTAG 579 0.3523 METSKQIDVHHQTQSSSSSSSSIDSNNYNYPSAISSLKTTDLSTDLKLGLSISPSSQSQLPFNSTTTSKEETLDWPPINKSILRRNTLAEKQNHSIIQRQRSLFVKVYMEGIPIGRKLNLLEHHSYDELVKALCHMFRTIILCPNSQPLNSWNFHVLTYEDQEGDWMMVGDVPWEMFLSNVKRLKITRADNC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00882 192 MobiDBLite consensus disorder prediction 8 25 - -
Vivi1g00882 192 ProSiteProfiles PB1 domain profile. 102 191 IPR000270 GO:0005515
Vivi1g00882 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 190 IPR003311 GO:0005634|GO:0006355
Vivi1g00882 192 MobiDBLite consensus disorder prediction 1 25 - -
Vivi1g00882 192 SUPERFAMILY CAD & PB1 domains 98 186 - -
Vivi1g00882 192 Gene3D - 97 192 - -
Vivi1g00882 192 Pfam AUX/IAA family 58 189 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00882 Vivi-Chr1 18901805 18902968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00882 105 192 B3 DNA Binding Superfamily AT2G46530 37.500 4.74e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g00882 AUX_IAA 5.5e-35 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00882 K14484 - gmx:100818083 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00882 1 18901805 18902968 Vivi1g00882 1 18901805 18902968 ECH