Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00881 ATGCATATGGCAATGTGCCAAACAAACAAGAGTTTTGTTGGCATGAAGCTGTTATGTGTGTTTGTGTTTGTGTTCTTCATAGGTTTTGTGGTTGTGGAAGGTTTTGAGAATGGTAATGTGACAGAGATGGAGTTTGTGAGAGGAAGAGGTTACTACAATAGACCTTTGATGGTTGGTCTTACTCTTATCAATGGAGCTGCTGCTAAAGGAGCTGTTTGTCTGGATGGATCTTCCCCGGCTTACCACTTCCACCGTGGATACGGTTCAGGATCGAACAGTTGGTTGATACATCTAGAGGGAGGAGGCTGGTGTGGAACTGTCAGAAATTGTATTTACAGCAAGAAAACGCGCCACGGTTCATCCTATTTTATGGAAAAACAGATACCGTTTATCGGGATATTGAGCAACAAAGCGGAGGAAAATCCAGATTTTTACAATTGGAATAGAGTAAAAATTCGTTATTGTGACGGCGCATCGTTTAGCGGGGACAGTCAAAATGCGGCAGCAGGGTTGTATTTCAGAGGGCAGCGCATTTGGCAAGCTGCAATGGAAGATTTAATGTCGAAAGGAATGCGATATGCCAAACAGGCTCTTCTTTCCGGATGTTCTGCGGGAGGTTTATCAGCTATACTACATTGCGATGAATTCCGGGAATTGTTTCCAAGAAACACTAGAGTAAAGTGCTTTAGCGATGCTGGATTATTCCTTGACTCCATTGATGTAGCTGGCCGTCGTAGTTTAAGGAATTTGTTTGGAAGCGTAGTCACCTTACAGGGTGTGCATAAGAGCCTTCCAAGGAGTTGTACCAGTCGCCTCAATCCAATTTTGTGCTTTTTTCCTCAGCGTTTAATCGCAAGTGTTAGGACTCCGCTATTTCTTCTCAATGCAGCTTATGATACTTGGCAGGTTCAAGCTAGTCTAGCTCCACCGTCTGCTGACTATCGTTGGAATTGGTTTGATTGCAGAAAAAACTACGCACGCTGCAGTTCACCACAGATACAATTTCTACAAAGTTTTCGAAACCAGATGCTTAGAGTTACAAGACGATTCTCATGGTCGCGCCAAAACGGATTATTCATTAATTCGTGCTTCGCTCATTGCCAATCCGAAAGACAGGATACATGGCATGCTCGTGGTTCTCCTCATATTGGAAATAAAGGGATCGCGGATTCTGTCGGGAACTGGTTTTTCGACCGAGTCGGTGTTAAAGCTGTAGGGTGTGCTTACCCTTGTGACAAAACCTGCCATAATTTGGTTTTCAACTAA 1266 0.4376 MHMAMCQTNKSFVGMKLLCVFVFVFFIGFVVVEGFENGNVTEMEFVRGRGYYNRPLMVGLTLINGAAAKGAVCLDGSSPAYHFHRGYGSGSNSWLIHLEGGGWCGTVRNCIYSKKTRHGSSYFMEKQIPFIGILSNKAEENPDFYNWNRVKIRYCDGASFSGDSQNAAAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLSAILHCDEFRELFPRNTRVKCFSDAGLFLDSIDVAGRRSLRNLFGSVVTLQGVHKSLPRSCTSRLNPILCFFPQRLIASVRTPLFLLNAAYDTWQVQASLAPPSADYRWNWFDCRKNYARCSSPQIQFLQSFRNQMLRVTRRFSWSRQNGLFINSCFAHCQSERQDTWHARGSPHIGNKGIADSVGNWFFDRVGVKAVGCAYPCDKTCHNLVFN 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00881 421 Pfam Pectinacetylesterase 55 399 IPR004963 GO:0016787
Vivi1g00881 421 PANTHER NOTUM-RELATED 24 417 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00881 Vivi-Chr1 18872287 18876235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00881 57 420 Carbohydrate Esterase AT1G57590 68.956 0.0 547
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00881 1 18872287 18876235 Vivi1g00881 1 18872287 18876235 ECH
Vivi1g00881 1 18872287 18876235 Vivi6g04757 6 150748454 150751036 ECH
Vivi1g00881 1 18872287 18876235 Vivi1g05428 1 118919626 118922405 ECH