Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00870 ATGGCTAATACTGATAGTATCACTAATCTTGTCATTAACAGTGTCAGTGATGCTGCCTCTGTCAAGAATTTTTCTGCTAACTGGCCAATGTCATCATCTGGACTGAATGCAAAAGGTCAATTTGCCATCTACTATAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCAAGAAATATTGATGATGGCTGCTACCACTGCCAAGTCTTCTGAATTGAAAAGTGGAATTCCATTCACTTCACTCTTTACCAGTGCCACCCCTTCTTCCCCACAAGGAACTTCTAACAATTTGCCTTCTCCTCCATCAGTCTGTTTCCCTGCTGCTGACAAGAGTTCCATTTGCAGGATGCAAGAGTTTCCATTAGCACGAAGACAGTCACTTCAAAGTTTTTTTGAGAAGAGAAGGATCAGGGTCCGTAGCAAAGCACCTTATACCTCATCATCATCAAAAGAAGCTAACAACATGAACAACAACTTCAACACAGCATTGGTTCCTTTCACTTGA 516 0.4128 MANTDSITNLVINSVSDAASVKNFSANWPMSSSGLNAKGQFAIYYNGSMCVYDGIPAEKVQEILMMAATTAKSSELKSGIPFTSLFTSATPSSPQGTSNNLPSPPSVCFPAADKSSICRMQEFPLARRQSLQSFFEKRRIRVRSKAPYTSSSSKEANNMNNNFNTALVPFT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00870 171 ProSiteProfiles Tify domain profile. 34 69 IPR010399 -
Vivi1g00870 171 SMART tify_2 34 69 IPR010399 -
Vivi1g00870 171 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 33 158 IPR040390 -
Vivi1g00870 171 Pfam Jas motif 124 148 IPR018467 -
Vivi1g00870 171 MobiDBLite consensus disorder prediction 146 171 - -
Vivi1g00870 171 Pfam tify domain 38 68 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00870 Vivi-Chr1 18664682 18666481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00870 40 162 Tify Gene Family AT5G20900 39.516 2.10e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi1g00870 tify 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00870 K13464 - gmx:100306655 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00870 1 18664682 18666481 Vivi4g01045 4 31112233 31114591 PCT