Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00869 ATGTCAGCAGAAGCTCCTCCTTTCCAAGAAGCAGCAAGATGCGTTGTCTGCAGTTGCAGTTTCAACACCTTCAGAAGACGGCATCACTGCCGGTGTTGTGGGAGAACATTGTGCAATGAACATTCATCGGATCAAATGGCTTTACCTCAATTTGGCATTTACTCGAATGTCCGTGTATGTGCTGATTGTTTCAACAATTCGCGATCTGGGAAGAGTGTACCACAAGCTTCTTCAGATGGAGTAAACAGCATAACAAATGCAGTTTCTGAATTAGATATCGACGCAAATGTTGATTCAAAAAGAACACCTATTGCAGATAATAAGCTTGCGCCGGGTGTTAAAGAGTGTAAGTGTGGAATGCCGCTTTGCATTTGTGAAGCTCCTGCCACTTCCTCTGATGCACTCCCCCAGGAGAAGAAATTCACCCCAGTTGTTACAGCTCCATCAAATCCTAAACCCAAGAAGACAGATAATGTTTCAAAAAATAAAAGTTCCACTTCCACGAACAAGTTTAGTTCTACGTTTAACCTCGGTAATGTATCTGCTAGTACCTCCAACAAACCCCAGGTGGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTAAAAAAACTTCTTAAGGAGGGTGTGGATGCAAATTACAGAGATAAGCAAGGACTATCTTTATTGCATTTGGCTGCAGTGTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAGTATAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCTCCTGTCACACTTCAATATAAAATGCGACAGAAAATTGAAGAAAGAAGATCTATGGACCAAAGGAATTGA 873 0.4124 MSAEAPPFQEAARCVVCSCSFNTFRRRHHCRCCGRTLCNEHSSDQMALPQFGIYSNVRVCADCFNNSRSGKSVPQASSDGVNSITNAVSELDIDANVDSKRTPIADNKLAPGVKECKCGMPLCICEAPATSSDALPQEKKFTPVVTAPSNPKPKKTDNVSKNKSSTSTNKFSSTFNLGNVSASTSNKPQVDYEVNGEGLREAIKNGDIAAVKKLLKEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPVTLQYKMRQKIEERRSMDQRN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00869 290 SUPERFAMILY FYVE/PHD zinc finger 8 73 IPR011011 -
Vivi1g00869 290 Gene3D - 150 276 IPR036770 -
Vivi1g00869 290 SMART fyve_4 3 69 IPR000306 GO:0046872
Vivi1g00869 290 ProSiteProfiles Ankyrin repeat profile. 199 226 IPR002110 GO:0005515
Vivi1g00869 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vivi1g00869 290 Pfam FYVE zinc finger 9 66 IPR000306 GO:0046872
Vivi1g00869 290 ProSiteProfiles Ankyrin repeat region circular profile. 227 258 - -
Vivi1g00869 290 ProSiteProfiles Ankyrin repeat profile. 227 259 IPR002110 GO:0005515
Vivi1g00869 290 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 8 68 IPR017455 -
Vivi1g00869 290 MobiDBLite consensus disorder prediction 149 170 - -
Vivi1g00869 290 Pfam Ankyrin repeats (3 copies) 201 268 IPR002110 GO:0005515
Vivi1g00869 290 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 284 - -
Vivi1g00869 290 CDD FYVE_scVPS27p_like 7 64 - -
Vivi1g00869 290 MobiDBLite consensus disorder prediction 142 170 - -
Vivi1g00869 290 SUPERFAMILY Ankyrin repeat 199 269 IPR036770 -
Vivi1g00869 290 SMART ANK_2a 227 256 IPR002110 GO:0005515
Vivi1g00869 290 SMART ANK_2a 194 223 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00869 Vivi-Chr1 18651270 18656740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00869 205 265 MAP Kinase Kinase Kinase AT4G18950 40.984 1.33e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00869 - - gmx:100814367 454.907