Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g00868 | ATGTCAGCAGAAGCTCCTCCTTTCCAAGAAGCAGCAAGATGCGTTGTCTGCAGTTGCAGTTTCAACACCTTCAGAAGACGGCATCACTGCCGGTGTTGTGGGAGAACATTGTGCAATGAACATTCATCGGATCAAATGGCTTTACCTCAATTTGGCATTTACTCGAATGTCCGTGTATGTGCTGATTGTTTCAACAATTCGCGATCTGGGAAGAGTGTACCACAAGCTTCTTCAGATGGAGTAAACAGCATAACAAATGCAGTTTCTGAATTAGATATCGACGCAAATGTTGATTCAAAAAGAACACCTATTGCAGATAATAAGCTTGCGCCGGGTGTTAAAGAGTGTAAGTGTGGAATGCCGCTTTGCATTTGTGAAGCTCCTGCCACTTCCTCTGATGCACTCCCCCAGGAGAAATTCACCCCAGTTGTTACAGCTCCATCAAATCCTAAACCCAAGAAGACAGATAATGTTTCAAAAAATAAAAGTTCCACTTCCACGAACAAGTTTAGTTCTACGTTTAACCTCGGTAATGTATCTGCTAGTACCTCCAACAAACCCCAGGTGGATTATGAAGTTAATGGAGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTAAAAAAACTTCTTAAGGAGGGTGTGGATGCAAATTACAGAGATAAGCAAGGACTATCTTTATTGCATTTGGCTGCAGTGTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAGCCTGGAGTATAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCTCCTGTCACACTTCAATATAAAATGCGACAGAAAATTGAAGAAAGAAGATCTATGGACCAAAGGAATTGA | 870 | 0.4126 | MSAEAPPFQEAARCVVCSCSFNTFRRRHHCRCCGRTLCNEHSSDQMALPQFGIYSNVRVCADCFNNSRSGKSVPQASSDGVNSITNAVSELDIDANVDSKRTPIADNKLAPGVKECKCGMPLCICEAPATSSDALPQEKFTPVVTAPSNPKPKKTDNVSKNKSSTSTNKFSSTFNLGNVSASTSNKPQVDYEVNGEGLREAIKNGDIAAVKKLLKEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPLDCAPVTLQYKMRQKIEERRSMDQRN | 289 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g00868 | 289 | MobiDBLite | consensus disorder prediction | 141 | 169 | - | - | |
| Vivi1g00868 | 289 | SUPERFAMILY | FYVE/PHD zinc finger | 8 | 73 | IPR011011 | - | |
| Vivi1g00868 | 289 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 72 | IPR013083 | - | |
| Vivi1g00868 | 289 | SMART | fyve_4 | 3 | 69 | IPR000306 | GO:0046872 | |
| Vivi1g00868 | 289 | Pfam | FYVE zinc finger | 9 | 66 | IPR000306 | GO:0046872 | |
| Vivi1g00868 | 289 | Gene3D | - | 149 | 275 | IPR036770 | - | |
| Vivi1g00868 | 289 | ProSiteProfiles | Ankyrin repeat profile. | 198 | 225 | IPR002110 | GO:0005515 | |
| Vivi1g00868 | 289 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Vivi1g00868 | 289 | ProSiteProfiles | Ankyrin repeat region circular profile. | 226 | 257 | - | - | |
| Vivi1g00868 | 289 | Pfam | Ankyrin repeats (3 copies) | 200 | 267 | IPR002110 | GO:0005515 | |
| Vivi1g00868 | 289 | ProSiteProfiles | Ankyrin repeat profile. | 226 | 258 | IPR002110 | GO:0005515 | |
| Vivi1g00868 | 289 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 2 | 283 | - | - | |
| Vivi1g00868 | 289 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Vivi1g00868 | 289 | SMART | ANK_2a | 193 | 222 | IPR002110 | GO:0005515 | |
| Vivi1g00868 | 289 | SMART | ANK_2a | 226 | 255 | IPR002110 | GO:0005515 | |
| Vivi1g00868 | 289 | SUPERFAMILY | Ankyrin repeat | 198 | 268 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g00868 | Vivi-Chr1 | 18651270 | 18656741 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g00868 | 204 | 264 | MAP Kinase Kinase Kinase | AT4G18950 | 40.984 | 1.27e-08 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g00868 | - | - | gmx:100814367 | 458.373 |