Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00867 ATGACTTTCTCCACCGAACAACCCTCCTCCAATTTCACCCTAACCCAATCCATATACGAAGCAGCCTTAATCCTCGCACTTCTCAGATGGATCCTATGTTTCCTTTTCAAAACAATCAAAAACAGAAACACACCCCAACAACAAAAACATCAACAATGTTGTCAAATGTTACCGTTAACAAGCTTTGGCGAAATCATAGAAAGACATCCGGAGACAGAAGATTCTAGTACTACTACATGTGCTGTTTGTTTGAACAAAATGAAAATGGAAGATGAGGTTAGAGAGTTGATGAACTGTTGCCATGTGTTTCATAGAGAATGTATTGATAAATGGTTGGAACATGGGTACGAGAATAATGATAGTTGGAATCAGACTTGTCCGCTTTGTAGAGCTCCTTTGATTAGTGCCGAGGCGGTATCTTCGGAGGTTTTGAGGGATTGTGTTTCTCCTAATCAACCTAGTTGGGCTGTTGAGAGACTTCTTTATCTCTTTGGTGATGATCTTTTGCCTTGTTAA 516 0.3992 MTFSTEQPSSNFTLTQSIYEAALILALLRWILCFLFKTIKNRNTPQQQKHQQCCQMLPLTSFGEIIERHPETEDSSTTTCAVCLNKMKMEDEVRELMNCCHVFHRECIDKWLEHGYENNDSWNQTCPLCRAPLISAEAVSSEVLRDCVSPNQPSWAVERLLYLFGDDLLPC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00867 171 ProSiteProfiles Zinc finger RING-type profile. 80 130 IPR001841 -
Vivi1g00867 171 SMART ring_2 80 129 IPR001841 -
Vivi1g00867 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Vivi1g00867 171 SUPERFAMILY RING/U-box 79 135 - -
Vivi1g00867 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 169 - -
Vivi1g00867 171 Pfam Ring finger domain 79 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00867 Vivi-Chr1 18643203 18644071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00867 1 168 C3H Transcription Factor Family AT5G20885 41.758 9.44e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00867 K16281 - gmx:100306203 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00867 1 18643203 18644071 Vivi1g00867 1 18643203 18644071 ECH