Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00861 ATGTCTCTCTATTCCACAAAAATAACATTCACATTCATCTTCTTCTTCCTCATACTCTCACCCCCACACTTCACTACTTCTGCTTCCTCTGATTTCAATGGATCAGTCTGCCTCAAAGTTTCACCCCTCAAATTCATCAGCACCGCTGAAGAAATTATCACTGTTATACAACAAGTCACCTCCATTTTATCTCGCTTTAACGGTGTCTTTGGCCACTCTCGTGTCGCAAAAGCCATTTCTGATTGCCTCGATTTACTCGACTTGTCCGCCGACCAGCTTAGCTGGTCCATTTCCGCCTCTCAAAACCCCAAAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTAAGCGCTGTTCTCGTGAATCCAGACACATGTATAGAAGGACTAGAAGGTACAATTGTGAAAGGTCTTGTATCAACCGGTCTCGATCGAGTAATGTCTTTGGTGAAGAGTCTCCTCGACGAAGTACTTCCCGTCAAAGACGAACTCACAACCGCTACCAGTTCGGATAAATTTCCTTCATGGATGAAAGACGACGACATGAAGCTGTTACAGGCGGATGGAGTGGCTGCAGATGCTGTTGTGGCTGCTGATGGGAGTGGGAATTATCTTAACGTGATGGACGCGATAACGGCAGCACCTGAAAGCAGCGTGAAAAGATATGTTATTTATGTGAAGAAAGGTGTTTATAATGAGAATGTTGAGATTAAGAAAAAGAAATGGAATATTATGATCATCGGTGACGGTATGGATGCGACTGTTATCTCGGGTAATCGGAATTTCATCGACGGTTGGACTACTTTCCGATCAGCAACCTTTGCTGTAAGTGGTAGAGAATTCATAGCACGCGACATTTCATTTCAGAACACCGCGGGTGCAGAGAAGCATCAAGCAGTGGCATTAAGATCAGATTCCGACCTCTCTGTATTTTATCGGTGTGGGATATTCGGTTATCAAGATAGCTTATATACTCATACTATGCGTCAATTCTACCGAGAGTGCAAAATCACTGGCACTGTGGATTTCATCTTCGGAGATGCCACGGTCGTGTTCCAGAATTGTCAAATACTTGCCAAGCAAGGAATGCCTAAACAAAAAAACACTATTACCGCTCAAGGACGAAAAGATCCAAACCAACCAACTGGTTTCTCGTTCCAATTTTGCAACATTTCAGCAGACACCGACCTTCTACCATCGGTTGGAACCATCCCAACATACCTTGGACGACCCTGGAAGACTTATTCGCGAACAATTTTCATGCAATCTTACATGAGTGACGTGATAAGGCCAGAGGGGTGGTTAGAGTGGGACGGAAGTTTTGCGTTGGACACATTGTACTACGGCGAATACATGAACTCTGGACCGGGTGCTGGACTATCTAACCGGGTGAAATGGTCAGGTTACCATGTGTTGAATGATTCGAGTGACGCTATTAAGTATACCGTGGCTCAATTTATTGAGGGAAATCTTTGGTTACCTGCCACTGGTGTAAGTTACATTGCTGGTTTGACAGTGTAA 1536 0.4427 MSLYSTKITFTFIFFFLILSPPHFTTSASSDFNGSVCLKVSPLKFISTAEEIITVIQQVTSILSRFNGVFGHSRVAKAISDCLDLLDLSADQLSWSISASQNPKGKDNSTGNLSSDLRTWLSAVLVNPDTCIEGLEGTIVKGLVSTGLDRVMSLVKSLLDEVLPVKDELTTATSSDKFPSWMKDDDMKLLQADGVAADAVVAADGSGNYLNVMDAITAAPESSVKRYVIYVKKGVYNENVEIKKKKWNIMIIGDGMDATVISGNRNFIDGWTTFRSATFAVSGREFIARDISFQNTAGAEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKITGTVDFIFGDATVVFQNCQILAKQGMPKQKNTITAQGRKDPNQPTGFSFQFCNISADTDLLPSVGTIPTYLGRPWKTYSRTIFMQSYMSDVIRPEGWLEWDGSFALDTLYYGEYMNSGPGAGLSNRVKWSGYHVLNDSSDAIKYTVAQFIEGNLWLPATGVSYIAGLTV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00861 511 CDD PMEI-like_4 27 165 - -
Vivi1g00861 511 Gene3D - 192 509 IPR012334 -
Vivi1g00861 511 FunFam Pectinesterase 192 509 - -
Vivi1g00861 511 SUPERFAMILY Pectin lyase-like 195 508 IPR011050 -
Vivi1g00861 511 Pfam Plant invertase/pectin methylesterase inhibitor 56 150 IPR006501 GO:0004857
Vivi1g00861 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 163 IPR035513 -
Vivi1g00861 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 158 IPR035513 -
Vivi1g00861 511 PANTHER PECTINESTERASE 47 499 - -
Vivi1g00861 511 SMART PMEI_2 28 165 IPR006501 GO:0004857
Vivi1g00861 511 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
Vivi1g00861 511 ProSitePatterns Pectinesterase signature 1. 223 242 IPR018040 -
Vivi1g00861 511 Pfam Pectinesterase 198 495 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00861 Vivi-Chr1 18489878 18492680 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00861 12 509 Carbohydrate Esterase AT3G43270 63.938 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00861 K01051 - gmx:100777500 718.768