Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00860 ATGGTTCTCTATTCCACAAAAACATTATTCAAATTCATCTTCTTCTTCCTCATACTATCTCTCCCATACTTCACTGCTTATGCTTCCAATAAATTCAATGGACCAGTCTTGCTCAAAACTTCTCCAATCCAATTCGTTAACTCTGCCAAGAAAGTTATCACCAATCTTCAACAGGTCACCGCCATTTTATCACGCTTCAACGTTAACGCCGCCCACCCTCGTGTCTCTAATGCCATTTCCGATTGCCTCGACTTAGTCGACTTGTCTATGGAAAATCTTCATTGGTCCATCTCCGCCATTCAAAATCCTAATGGAAATGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTGAGCGCTGTTCTTGTGAATCCAGACACATGCATAGAAGGATTACAAGGTACAAATGTGAAGGGTCTTGTATACACTGATTTTGATCGTGTAAAATCGGTGGTGAAGAATCTTCTTGATGAAGTAATACCTGTTAATGATCACGTCACAACCGCTATTGGCTCGGATCGATTTCCTTCATGGATTGAAGACAACGATATAAATCTGTTACGAGCAAAGAAAGTCAAAGCGGATGCTGTTGTGGCTGCTGATGGAAGTGGGGATTACCGTAGGGTGATGGACGCGATATCGGCAGCACCTGAAAACAGCAAGAAAAGATATGTTATACGTGTGAAAAAAGGTGTTTATATTGAGAATGTGGTGATTGATAAGAAGAAATGGAATATTATGATGTTCGGTGATGGTATGCATGCTACAGTTATCTCCGGTAATCGGAATTCCAAAGACGGTACTAAAACTTTCGGAACAGCTACCTTTGCTGTAATGGGTAGAGGGTTCATTGCACGCGACATTTCGTTTATGAACACCGCAGGTCCCGAGAAGCACCAAGCAGTGGCATTAAAATCAAGCTCTGACCTATCTGTATTTTATCGTTGCGGGATATTCGGTTATCAAGATAGCCTATACGCCCACAACATGCGTCAATTCTATAGAGAGTGCAAAATTACTGGTACCGTTGATATCATCTTTGGGTACGCCACAGCCGTGTTCCAAAAGTGTCAAATAATTGCAAGGCAAGGAAACCCTGATCAAAAGAACACTATTACCGCTCACGGACGAAAGTATCCGAGGCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCTGCGGAGCCCGACCTAATCAGCCCAACATACCTTGGTAGACCCTGGGAGAAGTATTCGCGAACAATTTTCATGCAATCATACATGAGTGACGCGATAAGGCCAGAAGGGTGGTTAGAGTGGAACAAAAGTTTTGCTTTGCGCACATTGTACTACGGTGAATACAAGAACTATGGACCGGGTTCTTTAGTCACTAACAGAGTGAAATGGCCGGGATACCATGTTTTGAAAAATTCCAAAGATGTTATTAAGTACACCGTGGCTCAATTTATTGACGGGGATAGTTGGTTACCAGCCACTGGTGTTACTTACGATTCTGGTCTGACAGTAAACAATATTTAA 1530 0.4222 MVLYSTKTLFKFIFFFLILSLPYFTAYASNKFNGPVLLKTSPIQFVNSAKKVITNLQQVTAILSRFNVNAAHPRVSNAISDCLDLVDLSMENLHWSISAIQNPNGNDNSTGNLSSDLRTWLSAVLVNPDTCIEGLQGTNVKGLVYTDFDRVKSVVKNLLDEVIPVNDHVTTAIGSDRFPSWIEDNDINLLRAKKVKADAVVAADGSGDYRRVMDAISAAPENSKKRYVIRVKKGVYIENVVIDKKKWNIMMFGDGMHATVISGNRNSKDGTKTFGTATFAVMGRGFIARDISFMNTAGPEKHQAVALKSSSDLSVFYRCGIFGYQDSLYAHNMRQFYRECKITGTVDIIFGYATAVFQKCQIIARQGNPDQKNTITAHGRKYPRQPTGFSFQFCNISAEPDLISPTYLGRPWEKYSRTIFMQSYMSDAIRPEGWLEWNKSFALRTLYYGEYKNYGPGSLVTNRVKWPGYHVLKNSKDVIKYTVAQFIDGDSWLPATGVTYDSGLTVNNI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00860 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 159 IPR035513 -
Vivi1g00860 509 NCBIfam pectinesterase inhibitor domain 48 158 IPR006501 GO:0004857
Vivi1g00860 509 CDD PMEI-like_4 26 166 - -
Vivi1g00860 509 FunFam Pectinesterase 192 504 - -
Vivi1g00860 509 SMART PMEI_2 41 161 IPR006501 GO:0004857
Vivi1g00860 509 Pfam Plant invertase/pectin methylesterase inhibitor 49 157 IPR006501 GO:0004857
Vivi1g00860 509 SUPERFAMILY Pectin lyase-like 196 502 IPR011050 -
Vivi1g00860 509 Gene3D - 192 504 IPR012334 -
Vivi1g00860 509 PANTHER PECTINESTERASE 47 494 - -
Vivi1g00860 509 ProSitePatterns Pectinesterase signature 2. 342 351 IPR033131 -
Vivi1g00860 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 163 IPR035513 -
Vivi1g00860 509 Pfam Pectinesterase 198 490 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00860 Vivi-Chr1 18484127 18485930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00860 12 504 Carbohydrate Esterase AT3G43270 56.031 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00860 K01051 - gmx:100777500 632.869