Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00859 ATGGTTCTCTATTCCACAAAAACAATGTTCACATTCATCTTCTTCTTCCTCATACTCTCTCCACACTTCACTGATTCTGCTTCTATTGATTTCAATGCACCCGTCTTGCTCAAAACTTCTCCGAACCAATTCATTAACTCTGCCAAACAAGTTATCACCAATCTTCAACAAGTCACTACCATTTTATCACGCTTCAACGTTAACGCAGCCCACCCTCGTGTCTCTAATGCCATTTCCGATTGCCTCGATTTAATCGACTTGTCCACGCAAAATCTTCATTGGTCCATTTCCGCCATTCAAAATCCTAATGGGAAGGATAACAGTACTGGAAATCTAAGCGCTGATCTAAGAACATGGCTGAGCGCTGTTCTTGTGAATCAAGACACGTGTATAGAAGGATTACAAGGTACAAATGTGAAGGGTCTTGTATACACTGATTTTGATCGTGTAAAATCGGTGGTGAAGAATCTTCTTGATGAAGTAATACCTGTTAATGATCACCTCACAACCGCTATTGGCTCGGATCGATTTCCTTCATGGATTAAAGACAACGATGTCCATCTGTTACGAGCAAAGAAAGTGAAAGCAGATGCTGTTGTGGCTGCTGATGGAAGTGGGAATTACCGTAGAGTGATGGACGCGATATCGGCAGCACCTGAAAACAGCAAGAAAAGATATGTTATACGTGTGAAAAAAGGTGTTTATATTGAGAATGTGGTGATTGATGAGAAGAAATGGAATATTATGATGTTCGGGGATGGTATGGATGCTACTGTTATCTCCGGTAATCGGAATAACGTCGACGCTTATATGATTCCCAAAACAGCTACCTTTGCTGTTAAGGGTAGAGGGTTCATTGCACGCGACATTTCGTTTAGGAACACCGCAGGCCCCGACAAGCACGTTGCAGTGGCATTACTATCAAGCTCTGATCTCTCTGTATTTTATCGTTGTGGGATATACGGTTATCAAGCCAGCCTATACGCCCAAGTCATGCGTCAATTCTATAGAGAGTGCAAAATCACTGGTACCTTAGATATCATTTTTGGGGACGCCACTGCCGTGTTCCAGAAGTGTCAAATACTAGCCAGGCAAGGATTGGAAGATCAAGAAAACACTATTACTGCTCAAGGACGACGATATCCTAGGCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGCGGAGACCAACGTAATCAACCCAACATTCCTTGGTAGACCCCAACAGAAGTATTCGCGAACAATTTTCATGCAATCCTACCTAAGTGACGCCATACACCCAGAAGGGTGGTTACCATGGATGGGAATTTTACATAGGGATACATTGTACTATGGTGAATACAAGAACTATGGACCAGGTTCTGTAGTCACTAACAGAGTGAAATGGCCGGGATACCATGTTTTGAATGATCCGAAAGATGTTATTAAGTACACCGTGGCTCAATTTATTGACGGGGATAGTTGGTTGCCTGCCACTGGTGTTCCTTATGATTCTGGTCTAACAGTAAAGAATATTTAA 1527 0.4244 MVLYSTKTMFTFIFFFLILSPHFTDSASIDFNAPVLLKTSPNQFINSAKQVITNLQQVTTILSRFNVNAAHPRVSNAISDCLDLIDLSTQNLHWSISAIQNPNGKDNSTGNLSADLRTWLSAVLVNQDTCIEGLQGTNVKGLVYTDFDRVKSVVKNLLDEVIPVNDHLTTAIGSDRFPSWIKDNDVHLLRAKKVKADAVVAADGSGNYRRVMDAISAAPENSKKRYVIRVKKGVYIENVVIDEKKWNIMMFGDGMDATVISGNRNNVDAYMIPKTATFAVKGRGFIARDISFRNTAGPDKHVAVALLSSSDLSVFYRCGIYGYQASLYAQVMRQFYRECKITGTLDIIFGDATAVFQKCQILARQGLEDQENTITAQGRRYPRQPTGFSFQFCNISAETNVINPTFLGRPQQKYSRTIFMQSYLSDAIHPEGWLPWMGILHRDTLYYGEYKNYGPGSVVTNRVKWPGYHVLNDPKDVIKYTVAQFIDGDSWLPATGVPYDSGLTVKNI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00859 508 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Vivi1g00859 508 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 162 IPR035513 -
Vivi1g00859 508 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 158 IPR035513 -
Vivi1g00859 508 SMART PMEI_2 26 160 IPR006501 GO:0004857
Vivi1g00859 508 Pfam Pectinesterase 197 489 IPR000070 GO:0030599|GO:0042545
Vivi1g00859 508 SUPERFAMILY Pectin lyase-like 195 502 IPR011050 -
Vivi1g00859 508 PANTHER PECTINESTERASE 43 493 - -
Vivi1g00859 508 FunFam Pectinesterase 191 503 - -
Vivi1g00859 508 NCBIfam pectinesterase inhibitor domain 38 157 IPR006501 GO:0004857
Vivi1g00859 508 CDD PMEI-like_4 26 165 - -
Vivi1g00859 508 Pfam Plant invertase/pectin methylesterase inhibitor 36 156 IPR006501 GO:0004857
Vivi1g00859 508 Gene3D - 191 503 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00859 Vivi-Chr1 18476165 18477974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00859 9 503 Carbohydrate Esterase AT3G43270 52.918 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00859 K01051 - gmx:100777500 602.823