LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00858	ATGGCTCTCTGTCTCAAAAAACAACCATTTACAATAGCCACATTCATCTTCTTCTTCCTCCTACTATCTCTCCCACAATTCACTGCTTCTCCCAATGATTTATCCTGTCTCAAAGTTTCTCCCATCAATTTCACCAACTCTGCTGAAGAAGTTATCACCAATATTCAACAAGTCACCTCCATTTTATCAGGCTTCACAAATGCTTTCGAACAACCTCGCTTCTTAAATGCTGTTTCTGATTGCCTCGATTTACTTGACATGTCCGCAGACCAACTTGACTGGATTATTTCCGCCACTAAGAATCCCAGAGTGAAGGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTGAGCGCTGTTCTTGTGAATCAAGACACGTGTATAGAAGGATTACAAGGTACAAATGTGATGGGTCTTGTCTCCACAGATCTTTATGGTGTAATGTTTTTGGTGATGAGTCTTCTTGATAAAGTAATTCCCAATGAGCAACTCGCAACCGCTACCAGTTCGGATCAATATCCCTTGTGGATGAAATACGAGGACATGAAACTGTTGCAGGCAAACGAAACTACTGCAGATTCAGTTGTGGCTGCGGATGGAAGTGGGAATTACAGCAAAGTAATGGATGCGGTAAATGCAGCACCTGAATTCAACATGAAAAGATATGTTATATTTGTGAAAAAAGGTGTTTACGTTGAGAATGTTGATATTAAGAAGAAGAAATGGAATATTATGATCATCGGAGAAGGTATGGATGCGACTGTTATCTCGGGTGATTGGAATCGTGTCGATGGTCGGAGTACTTTCGGATCAGCTACTTTTGCTGTAAATGGTAGAGGGTTTATTGCACGCGACATTTCGTTTAAAAACACCGCAGGTCCCGAAAAGGAGCAAGCAGTGGCATTGAGATCAGACTCTGACCTCTCTGTATTTTATCGCTGTGGGATATTCGGTTATCAAGATAGCCTATATCCCCACAGCATGCGTCAATTCTACAGAGAGTGCACAATCGCTGGTACCGTGGATTTCATCTTTGGATATGGCACCGCCGTGTTCCAGAATTGTCAAATAATAGCCAAGCAAGGGATTGCTAACCAAAAGAACACTGTTGCCGCTCATGGAAGGATGGATCCAAACCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGCAGAGAACGATACCGTCCCAACATACCTCGGCAGACCCTGGAAGAATTTTTCAAGGACAGTTTTCATGCAATCACACATGAGTAACGCGATAAGACCAGAAGGGTGGTTAGAGTGGAACGGAAGTTTTGCTTTGGACACATTGTACTACGGTGAATACATGAATTCTGGACCGGGTGCTGAGCTAGCTAACAGAGTGAAATGGCCGGGTTACCATGTGTTCAATGACTCGAGCGATGCTAATAAGTATACCGTGGCTCAGTTTATTGAGGGGGGTCTATGGTTGTCCTCCACTGGTGTTAATTACACTGCTGGTTTGACAGTGTAA	1512	0.4306	MALCLKKQPFTIATFIFFFLLLSLPQFTASPNDLSCLKVSPINFTNSAEEVITNIQQVTSILSGFTNAFEQPRFLNAVSDCLDLLDMSADQLDWIISATKNPRVKDNSTGNLSSDLRTWLSAVLVNQDTCIEGLQGTNVMGLVSTDLYGVMFLVMSLLDKVIPNEQLATATSSDQYPLWMKYEDMKLLQANETTADSVVAADGSGNYSKVMDAVNAAPEFNMKRYVIFVKKGVYVENVDIKKKKWNIMIIGEGMDATVISGDWNRVDGRSTFGSATFAVNGRGFIARDISFKNTAGPEKEQAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECTIAGTVDFIFGYGTAVFQNCQIIAKQGIANQKNTVAAHGRMDPNQPTGFSFQFCNISAENDTVPTYLGRPWKNFSRTVFMQSHMSNAIRPEGWLEWNGSFALDTLYYGEYMNSGPGAELANRVKWPGYHVFNDSSDANKYTVAQFIEGGLWLSSTGVNYTAGLTV	503

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00858	503	Gene3D	-	190	501	IPR012334	-
	Vivi1g00858	503	ProSitePatterns	Pectinesterase signature 2.	340	349	IPR033131	-
	Vivi1g00858	503	Pfam	Pectinesterase	197	486	IPR000070	GO:0030599\|GO:0042545
	Vivi1g00858	503	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	48	155	IPR035513	-
	Vivi1g00858	503	PANTHER	PECTINESTERASE	43	491	-	-
	Vivi1g00858	503	ProSitePatterns	Pectinesterase signature 1.	221	240	IPR018040	-
	Vivi1g00858	503	Gene3D	Invertase/pectin methylesterase inhibitor family protein	34	158	IPR035513	-
	Vivi1g00858	503	SMART	PMEI_2	26	157	IPR006501	GO:0004857
	Vivi1g00858	503	CDD	PMEI-like_4	29	159	-	-
	Vivi1g00858	503	FunFam	Pectinesterase	190	501	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g00858	Vivi-Chr1	18470104	18472249	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g00858	16	501	Carbohydrate Esterase	AT3G43270	57.864	0.0	602

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g00858	K01051		-	gmx:100812756	659.833

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