Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00858 ATGGCTCTCTGTCTCAAAAAACAACCATTTACAATAGCCACATTCATCTTCTTCTTCCTCCTACTATCTCTCCCACAATTCACTGCTTCTCCCAATGATTTATCCTGTCTCAAAGTTTCTCCCATCAATTTCACCAACTCTGCTGAAGAAGTTATCACCAATATTCAACAAGTCACCTCCATTTTATCAGGCTTCACAAATGCTTTCGAACAACCTCGCTTCTTAAATGCTGTTTCTGATTGCCTCGATTTACTTGACATGTCCGCAGACCAACTTGACTGGATTATTTCCGCCACTAAGAATCCCAGAGTGAAGGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTGAGCGCTGTTCTTGTGAATCAAGACACGTGTATAGAAGGATTACAAGGTACAAATGTGATGGGTCTTGTCTCCACAGATCTTTATGGTGTAATGTTTTTGGTGATGAGTCTTCTTGATAAAGTAATTCCCAATGAGCAACTCGCAACCGCTACCAGTTCGGATCAATATCCCTTGTGGATGAAATACGAGGACATGAAACTGTTGCAGGCAAACGAAACTACTGCAGATTCAGTTGTGGCTGCGGATGGAAGTGGGAATTACAGCAAAGTAATGGATGCGGTAAATGCAGCACCTGAATTCAACATGAAAAGATATGTTATATTTGTGAAAAAAGGTGTTTACGTTGAGAATGTTGATATTAAGAAGAAGAAATGGAATATTATGATCATCGGAGAAGGTATGGATGCGACTGTTATCTCGGGTGATTGGAATCGTGTCGATGGTCGGAGTACTTTCGGATCAGCTACTTTTGCTGTAAATGGTAGAGGGTTTATTGCACGCGACATTTCGTTTAAAAACACCGCAGGTCCCGAAAAGGAGCAAGCAGTGGCATTGAGATCAGACTCTGACCTCTCTGTATTTTATCGCTGTGGGATATTCGGTTATCAAGATAGCCTATATCCCCACAGCATGCGTCAATTCTACAGAGAGTGCACAATCGCTGGTACCGTGGATTTCATCTTTGGATATGGCACCGCCGTGTTCCAGAATTGTCAAATAATAGCCAAGCAAGGGATTGCTAACCAAAAGAACACTGTTGCCGCTCATGGAAGGATGGATCCAAACCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGCAGAGAACGATACCGTCCCAACATACCTCGGCAGACCCTGGAAGAATTTTTCAAGGACAGTTTTCATGCAATCACACATGAGTAACGCGATAAGACCAGAAGGGTGGTTAGAGTGGAACGGAAGTTTTGCTTTGGACACATTGTACTACGGTGAATACATGAATTCTGGACCGGGTGCTGAGCTAGCTAACAGAGTGAAATGGCCGGGTTACCATGTGTTCAATGACTCGAGCGATGCTAATAAGTATACCGTGGCTCAGTTTATTGAGGGGGGTCTATGGTTGTCCTCCACTGGTGTTAATTACACTGCTGGTTTGACAGTGTAA 1512 0.4306 MALCLKKQPFTIATFIFFFLLLSLPQFTASPNDLSCLKVSPINFTNSAEEVITNIQQVTSILSGFTNAFEQPRFLNAVSDCLDLLDMSADQLDWIISATKNPRVKDNSTGNLSSDLRTWLSAVLVNQDTCIEGLQGTNVMGLVSTDLYGVMFLVMSLLDKVIPNEQLATATSSDQYPLWMKYEDMKLLQANETTADSVVAADGSGNYSKVMDAVNAAPEFNMKRYVIFVKKGVYVENVDIKKKKWNIMIIGEGMDATVISGDWNRVDGRSTFGSATFAVNGRGFIARDISFKNTAGPEKEQAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECTIAGTVDFIFGYGTAVFQNCQIIAKQGIANQKNTVAAHGRMDPNQPTGFSFQFCNISAENDTVPTYLGRPWKNFSRTVFMQSHMSNAIRPEGWLEWNGSFALDTLYYGEYMNSGPGAELANRVKWPGYHVFNDSSDANKYTVAQFIEGGLWLSSTGVNYTAGLTV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00858 503 Gene3D - 190 501 IPR012334 -
Vivi1g00858 503 ProSitePatterns Pectinesterase signature 2. 340 349 IPR033131 -
Vivi1g00858 503 Pfam Pectinesterase 197 486 IPR000070 GO:0030599|GO:0042545
Vivi1g00858 503 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 155 IPR035513 -
Vivi1g00858 503 PANTHER PECTINESTERASE 43 491 - -
Vivi1g00858 503 ProSitePatterns Pectinesterase signature 1. 221 240 IPR018040 -
Vivi1g00858 503 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 158 IPR035513 -
Vivi1g00858 503 SMART PMEI_2 26 157 IPR006501 GO:0004857
Vivi1g00858 503 CDD PMEI-like_4 29 159 - -
Vivi1g00858 503 FunFam Pectinesterase 190 501 - -
Vivi1g00858 503 Pfam Plant invertase/pectin methylesterase inhibitor 51 140 IPR006501 GO:0004857
Vivi1g00858 503 SUPERFAMILY Pectin lyase-like 195 500 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00858 Vivi-Chr1 18470104 18472249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00858 16 501 Carbohydrate Esterase AT3G43270 57.864 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00858 K01051 - gmx:100812756 659.833