Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00857 ATGGCTCTCTCTTTCAAAAAACCATTCAGCATTGCCACATTCATCTTCTTCTTCCTCCTACTCTCTCTCCCACACTTCATTGCTTCTGCTTCTCCCAATGATTTATCATGTCTGAAAGTTTCTCCTATCAGTTTCACTAACTCTGCCAAAGAAGTTATCACCAATCTTCAACAAGTTACCTCCATTTTATCACGCTTTACAGGCGCTTTCGGACAATCTCATCTCTTAAATGCTGTTTCCGATTGCCTTGATTTACTTGACATGTCTGCAGACCAACTTGACTGGATTATTTCCGCCACTGAGAATCCCAGAGGGAAGGATAACGGTACTGGAAATCTAAGCTCCGATCTTAGAACATGGCTGAGCGCTGTTCTTGTGAATCAAGACACGTGTATAGAAGGATTACAAGGTACAAATGTAATGGGTCTTGTCTCCACTGATCTTTATGGTGTAATGTCTTTGGTGATGAGTCTTCTTGATAAAGTAATTCCCAATGATCAACACACAACCTCTACCAGTTCGGATCAATATCCCTTGTGGATGAAAGACGAGGACATGAAGCTGTTGCAGGCAAACGAAACTACTGCAGATGCTGTTGTGGCTGCGGATGGAAGTGGGAATTACAGTAATGTAACGGATGCGGTAAAGGCAGCACCTGAACTCAACATGAAAAGATATGTTATATATGTGAAAAAAGGTGTTTATGTTGAGAATGTTGGGATTGATAAGAAGAAATGGAATATTATGATGATAGGTGAAGGTATGAACACGACTTTTATCTCCGGTAATCGGAGTTGTGTGGATGGTTGGAAGACTTTCGGATCAGCTACCTTTGCTGTAAAGGGTAGAGGATTCATAGCACGCGACATTTCATTTATAAACACCGCAGGTCCAGAGAAGCACCAAGCAGTGGCATTAAGATCAGACTCTGACCTCTCTGTATTTTATCGGTGTGGGATATTCGGTTATCAAGATAGCCTATATCCCCACAGCATGCGTCAATTCTACAGAGAGTGCACAATCACTGGTACTGTGGATTTCATCTTTGGAGATGCCACGGCCGTGTTCCAGAATTGTCAAATAATAGCCAAGCAAGGGAAGCCTGATCAAAAGAACACCGTTACCGCTCAAGGACGACAAGACCCAGGCCAACCAACCGGTTTCTCCTTCCAATTTTGCAACATTTCAGCCGAGAATGAAACCATCCCAACATACCTTGGTAGACCCTGGAAGAATTTTTCGCGGACAATCTTCATGCAATCACACATGAGTAACGCGATAAGACCAGAAGGGTGGTTAGAGTGGAATGAAACTTTTGCTTTTGACACATTGTACTATGGTGAATACAATAACTCTGGACCGGGGGCTGAGCTAGCTAACAGAGTGAAATGGCCGGGTTACCATGTGTTCAATGACTCGAGCGATGCTAATAAGTACACCGTGGCTCAATTTATTGAAGGCAATCTTTGGTTACCCTCCACTGGTGTTAATTACACTGCTGGTTTGTAA 1509 0.4301 MALSFKKPFSIATFIFFFLLLSLPHFIASASPNDLSCLKVSPISFTNSAKEVITNLQQVTSILSRFTGAFGQSHLLNAVSDCLDLLDMSADQLDWIISATENPRGKDNGTGNLSSDLRTWLSAVLVNQDTCIEGLQGTNVMGLVSTDLYGVMSLVMSLLDKVIPNDQHTTSTSSDQYPLWMKDEDMKLLQANETTADAVVAADGSGNYSNVTDAVKAAPELNMKRYVIYVKKGVYVENVGIDKKKWNIMMIGEGMNTTFISGNRSCVDGWKTFGSATFAVKGRGFIARDISFINTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECTITGTVDFIFGDATAVFQNCQIIAKQGKPDQKNTVTAQGRQDPGQPTGFSFQFCNISAENETIPTYLGRPWKNFSRTIFMQSHMSNAIRPEGWLEWNETFAFDTLYYGEYNNSGPGAELANRVKWPGYHVFNDSSDANKYTVAQFIEGNLWLPSTGVNYTAGL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00857 502 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Vivi1g00857 502 Gene3D - 191 502 IPR012334 -
Vivi1g00857 502 PANTHER PECTINESTERASE 43 492 - -
Vivi1g00857 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 157 IPR035513 -
Vivi1g00857 502 CDD PMEI-like_4 27 160 - -
Vivi1g00857 502 Pfam Pectinesterase 197 488 IPR000070 GO:0030599|GO:0042545
Vivi1g00857 502 ProSitePatterns Pectinesterase signature 1. 222 241 IPR018040 -
Vivi1g00857 502 SMART PMEI_2 27 158 IPR006501 GO:0004857
Vivi1g00857 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 162 IPR035513 -
Vivi1g00857 502 SUPERFAMILY Pectin lyase-like 195 501 IPR011050 -
Vivi1g00857 502 FunFam Pectinesterase 191 502 - -
Vivi1g00857 502 Pfam Plant invertase/pectin methylesterase inhibitor 39 141 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00857 Vivi-Chr1 18389849 18393452 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00857 14 502 Carbohydrate Esterase AT3G43270 58.755 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00857 K01051 - gmx:100777500 671.003