Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00856 ATGGCTCTCTGTCTCAAAAAACAACCATTTACAATAGCCACATTCATCTTCTTCTTCCTCCTACTATCTCTCCCACACTTCACTGCTTCTCCCAATGATTTATCCTGTCTCAAAGTTTCTCCCAACAATTTCACCAACTCTGCTGAAGAAGTTGTCACCAATATTCAACAAGTCACCCCCATTTTGTCACACTTCACAAGTGCTTTCGGACAATCTCGTCTCTTAAACGCCGTTTTCGATTGCATGAATTTACTTGACGGGTCTGTAGACCAACTTGAGTGGATTATTTCCGCCACTCAGAATCCCATAGGGAAGGATAACAGTACTGGAAATCTAAGCTCTGATCTAAGAACATGGCTTAGCGCTGTCCTTGTGAATCAAGACACATGTATAGAAGGATTACAAGGTACAAATGTGATGGATCTTCTATCTACTGATCTTTATCGTGTAATGTCCTCAGTGAAGAATCTTCTTGATAAAGTAATTCCCATCAACGATCAACTCGCAACTGCTACCAGTTCGGATCAATTTCCTTCATGGATAATAGACAACGACATGAAGCTGTTGCAGGCAAACGAAACTACTGCAGATGCTGTTGTGGCTGCGGATGGAAGTGGGAATTACAGTAATGTAACGGATGCGGTAAATGCAGCACCTGAACTCAATATGAAAAGATATGTTATATATGTGAAGAAAGGTGTTTATATTGAGAATGTAGAGATTGATAAGAAGAAATGGAATATTATGATAATCGGTGAAGGTATGGACACGACTGTTATCTCTGGTGATTGGAATTATGCCGATGGTTCGACTACTTTTGGATCAGCTACCTTTGCTGTAAATGGTAGAGGGTTCATAGCACGCGACATTTCATTTCAAAACACCGCAGGTCCTGAAAAGGAGCCAGCAGTGGCATTAAGATCAGACTCTGACCTCTCTGTATTTTATCGGTGTGGGATATTCGGTTATCAAGATAGCCTATACCCCCACAGCATGCGTCAATTCTACAGAGAATGCACAATCGCTGGTACCGTGGATTTCATCTTTGGATATGCCACCGCCATGTTCCAGAAATGTCAAATAATAGCCAAGCAAGGGATGCCAACACAAAAGAACACTGTCGCTGCTCATGGAAGGATGGACCCAAACCAACCAACTGGTTTCTCCTTCCAATTTTGCAACATTTCAGCAGAGAATGATACTGTCCCAACATACCTTGGTAGACCCTGGAAGAATTTTTCAAGGACAGTTTTCATGCAATCCTACATGAGTAACGCGATAAGACCAGAGGGGTGGTTAGAGTGGAACGGAAGTTTTGCTTTGGACACATTGTACTATGGTGAATACATGAACTCTGGACCGGGATCTGGGCTAGCTAACAGAGTGAAATGGCCGGGTTACCATGTGTTCAATGACTCGAGCGATGCTAATAACTATACCGTGGCTCAGTTTATTGAGGGGGATCTCTGGTTATCCTCCACTGGTGTTAATTACACTGCTGGTTTGACAGTGTAA 1515 0.4257 MALCLKKQPFTIATFIFFFLLLSLPHFTASPNDLSCLKVSPNNFTNSAEEVVTNIQQVTPILSHFTSAFGQSRLLNAVFDCMNLLDGSVDQLEWIISATQNPIGKDNSTGNLSSDLRTWLSAVLVNQDTCIEGLQGTNVMDLLSTDLYRVMSSVKNLLDKVIPINDQLATATSSDQFPSWIIDNDMKLLQANETTADAVVAADGSGNYSNVTDAVNAAPELNMKRYVIYVKKGVYIENVEIDKKKWNIMIIGEGMDTTVISGDWNYADGSTTFGSATFAVNGRGFIARDISFQNTAGPEKEPAVALRSDSDLSVFYRCGIFGYQDSLYPHSMRQFYRECTIAGTVDFIFGYATAMFQKCQIIAKQGMPTQKNTVAAHGRMDPNQPTGFSFQFCNISAENDTVPTYLGRPWKNFSRTVFMQSYMSNAIRPEGWLEWNGSFALDTLYYGEYMNSGPGSGLANRVKWPGYHVFNDSSDANNYTVAQFIEGDLWLSSTGVNYTAGLTV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00856 504 Gene3D - 191 502 IPR012334 -
Vivi1g00856 504 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Vivi1g00856 504 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 168 IPR035513 -
Vivi1g00856 504 SMART PMEI_2 26 164 IPR006501 GO:0004857
Vivi1g00856 504 Pfam Plant invertase/pectin methylesterase inhibitor 29 144 IPR006501 GO:0004857
Vivi1g00856 504 FunFam Pectinesterase 191 502 - -
Vivi1g00856 504 PANTHER PECTINESTERASE 43 492 - -
Vivi1g00856 504 CDD PMEI-like_4 25 165 - -
Vivi1g00856 504 SUPERFAMILY Pectin lyase-like 195 501 IPR011050 -
Vivi1g00856 504 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 167 IPR035513 -
Vivi1g00856 504 Pfam Pectinesterase 197 488 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00856 Vivi-Chr1 18387127 18389476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00856 15 502 Carbohydrate Esterase AT3G43270 59.533 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00856 K01051 - gmx:100812756 658.677