Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00854 ATGGCGTTTCAAGATTTCGACCTCATCTCAGAACGACGAAGGAACGAGAAGAAACAACAGCTGAAGAAAAGAATCCTCATCGGTGTTGTTTCTACCGTTGTCCTAGTTGGTATGATAGGTTGTGCATTCTTCGTTGCCACCACAAAATACGGTGCTATTGGTGATAAAAACACCAAGGACGCAGGATCTACAACTTCTAACACCAGCAAACACGTTGCACATTCAGAAAAGATAGTGAAATTAGTATGCAGTACCGCGGATTACAAGGAAAAATGTGAAGGTCCTCTTAACAAAGCAGTGGAAGAGGATCCGAAACTTCAACACCCGAAAGATCTTCTCAAAGTCTATGTCAAAATCGTCCAGGACGAAGTTAACAAAGCGTTTAACAAAACAAACTCATTCAAATTCAGTAACGAAGAAGAGAGAGGCGCGTTTGAGGATTGTAAACAGCTTATTGCAGATGCTAAGGAAGACATTGAAGCCTCTATCAGTCAACTTGGAGAAATCGAATTCAAGAAACTTTCTTCGAAGGCACCTGACCTAAACAGTTGGTTGAGTGCTGTTATCTCTTTCCAACAAACATGTGTCGATGGCTTTCCCGAAGGAAAAATGAAGACAGATCTTCAGAAACTCTTTGATGATTCTAAGGAATTTGTCAGCAATTCTCTTGCTATTGTGACTCAGGTTTCTACATTCCTTTCGACCGTTCAGACCCTCACGCGCGGCCGTTTGTTGTTGGCCGATAACTCCCCTGTTGCTTCTTTGGATTCCGAAGGCTTACCTTCATGGATCCATCCCGAAGAAAGAAGAGTCTTGAAGGCTTCTGATATTAGACCTACACCTAATGTCACAGTCGCAAAAGACGGAAGCGGTGACTTCAAAACCATCTCCGAGGCTTTGGCTGCCATCCCCGCAATCTACCCTGGAAGGTATGTGGTTTATGTTAAAGAAGGAGTTTACGACGAAACCGTGACAGTAACCAAGAAAATGCAAAATGTAACCATGTATGGTGATGGATCACAAAAAAGTATTATCACCGGTAACAAAAACTACAGGGACGGTGTCAGAACTTTCCTAACTGCAAGTTTCGTGGTGCTAGGAGAAGGATTTTTGGGTCTAGCAATGGGATTCAGGAACACAGCCGGTCCAGACGGACATCAAGCCGTGGCAGCCCGAGTCCAAGCCGACCGTGCCGTTTTCGCCAACTGTCGCTTCGAGGGTTACCAAGACACACTCTACACACAAACACACAGACAATTCTACCGCAGTTGCATCGTAACAGGAACAATCGACTTCATCTTCGGCGACGCAGCAGTCGTATTCCAGAACTGCATCATGATAGTGAGAAAACCAATGGACAACCAAAATAACATGGTGACAGCACAAGGAAGAATGGACAACAAACAAGCCACAGGAACAGTTCTACAAAAGTGCATCATCAAAGCCGATGAGAAACTCGCGCCTGTCACGAAAAAAATCAGAAGTTACCTTGGTAGACCATGGAAGGAGTTTTCAAGAACAATAGTAATGGAAACTGAAATAGGTGAGTTTATTCATCCTGATGGATGGACACCATGGGAAGGAAAATTCGCGTTAGATACATTATACTACGCCGAGTTTAACAACACTGGACCGGGTTCAAGTACTAGTGCTAGAATCAAATGGCCTGGTTATAAGGTTATTAACAAAGAAGAAGCTAGCAAGTACACTGTGCAAAATTTCTTGAAGGGAACATGGGTTCAATCTTCTGGTGTGCCTTCTCAACAAGGAATGTACTATTGA 1782 0.4355 MAFQDFDLISERRRNEKKQQLKKRILIGVVSTVVLVGMIGCAFFVATTKYGAIGDKNTKDAGSTTSNTSKHVAHSEKIVKLVCSTADYKEKCEGPLNKAVEEDPKLQHPKDLLKVYVKIVQDEVNKAFNKTNSFKFSNEEERGAFEDCKQLIADAKEDIEASISQLGEIEFKKLSSKAPDLNSWLSAVISFQQTCVDGFPEGKMKTDLQKLFDDSKEFVSNSLAIVTQVSTFLSTVQTLTRGRLLLADNSPVASLDSEGLPSWIHPEERRVLKASDIRPTPNVTVAKDGSGDFKTISEALAAIPAIYPGRYVVYVKEGVYDETVTVTKKMQNVTMYGDGSQKSIITGNKNYRDGVRTFLTASFVVLGEGFLGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVTGTIDFIFGDAAVVFQNCIMIVRKPMDNQNNMVTAQGRMDNKQATGTVLQKCIIKADEKLAPVTKKIRSYLGRPWKEFSRTIVMETEIGEFIHPDGWTPWEGKFALDTLYYAEFNNTGPGSSTSARIKWPGYKVINKEEASKYTVQNFLKGTWVQSSGVPSQQGMYY 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00854 593 SMART PMEI_2 74 225 IPR006501 GO:0004857
Vivi1g00854 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 229 IPR035513 -
Vivi1g00854 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 230 IPR035513 -
Vivi1g00854 593 PANTHER PECTINESTERASE 38 581 - -
Vivi1g00854 593 SUPERFAMILY Pectin lyase-like 279 588 IPR011050 -
Vivi1g00854 593 ProSitePatterns Pectinesterase signature 2. 426 435 IPR033131 -
Vivi1g00854 593 FunFam Pectinesterase 276 591 - -
Vivi1g00854 593 CDD PMEI-like_3 81 231 - -
Vivi1g00854 593 Pfam Pectinesterase 282 577 IPR000070 GO:0030599|GO:0042545
Vivi1g00854 593 FunFam Pectinesterase 75 230 - -
Vivi1g00854 593 Pfam Plant invertase/pectin methylesterase inhibitor 78 225 IPR006501 GO:0004857
Vivi1g00854 593 NCBIfam pectinesterase inhibitor domain 67 229 IPR006501 GO:0004857
Vivi1g00854 593 Gene3D - 277 591 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00854 Vivi-Chr1 18365874 18368110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00854 1 592 Carbohydrate Esterase AT4G33230 47.967 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00854 - - gmx:100784679 897.501