Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00820 ATGAAGGCTCCACCTAATGGTCACTTGCCTAGTTCTGGAGAAGGAGAAAGGAAGACGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCACCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCAGCTTCCATGCAAAAGCAGACCGACTTCATACCTAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGACGAAGTCTATGCACAGATGACCCTTCAACCTGTAACCAAATATGACAAGGAAGCAATACTGGCATCAGACTTTGGCCTCAAACAAAACCGTCAACCGACCGAATTCTTTTGCAAGACTCTAACGGCAAGCGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAAAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATTCGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGACACTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTCGCCGGAGATTCCGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTTTGCGGCGCGCTAATAGACAGCAGCCAGCACTTTCTTCGTCGGTGATATCCAGCGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTACGCTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGTAGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGATTGGATGGGATGAATCGACAGCTGGTGAACGCCCAAGCAGAGTTTCGATTTGGGATGTTGAGCCAGTAGTGACTCCTTTCTATATTTGTCCGCCTCCATTTTTCAGGCAAAAGTTCCCAAGGCAACCTGGAATGCCAGATGATGAGTCCGATGTAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGACGAATTCGGCATGAAGGACGCCTCAAGTTCAGGCTTCCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTTTCAGGTGGTCAATCAGGATGTTTTCCACCCATGCTCTCATCCAATACTCTCCATGGTAATCTTAGCACCGACGACCCATCCAAATTATTAAGTTTTCAAACTCCACTCCTCTCTGCGCCAAATCATCAATTTAACAAACCTAATTTACCTAATCAAATCAATCAATTGCAACAATCCCCAGCATCATGGCCTCAGCAGCAACAGCAACAACAACAGTTACCGCAACAACAACAACAACAGTTACAGCAGCAGCAGCAACAACAACAACAGCACTTACAGCAGCAGCAGCACCAACAACTGCAGCAGCACCAACACCAGCAGCTACAGTCATTGTCACAAATACCAATGAACCAGTTTCAGCAGCAGAGGCAACAGCAGCTACCTGAATCACAAAGCTTGACACTGCTACAGCAACAGATGACTCAGCAGCTGGGACAGCAGTCGCAGAAACAGCCACAGTCATCTCAACATGCTATTATGAATAATGGTGTAATTGCTTCTAACCAGATTTCAAATCAGTTTGCCCAGCAACCGGTAACTTACGCTCAGCTTCAGCAACAACAATTACTCTCAGGAGGTATGCCACTCCAGCAAAGTATCCAATCAGTCAGTAAGAATACATTCCCAGTGACAACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAACAAGCGAGTCTCTTACAAAGGCAGCAGCAACAGACACAGTTACAACAATCTCCACTGCAGGTATTGCAACAAAGCCAACAACAGAGGGTGACACCAAATCTGCCTGTGGCTCAAATGTCTCAACAAAACACCTCAGAGCAACAATTGCAGCTACAGTTTTTGCACAAATTGCAGCAGCAGCAGCAGCAGCAACAACAACAATTTCTTTCGACGTCTAGCCCACTTTTGCAATCTCAGTTTCTACAACAAAATACTCACCAACTAAGTCAGCAATTACCACAGCTTCCTACATCCCAACAACATACTCAACAGCTTGGCATTAATGCATTTTCAACAGAGAAGCTTCTTAACAGCAACAATCTGTCTTCTTCATCACATATGCAATCACAACAGGTTTCTGTGAATCAAACCCTGAATATGCAGAAGCCACTCACAATTACTAGAGTTCCCTCTACTCTTACAGATGGAGAGGCTCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCAACCAAACAGCCTCAAAAGAAATCAACAAGTACCAACTACAATTGGCGGGATCTTGGTAGCAGAGCCTACCAGTAATCTGATACAGGACCTTCAGAGTAAGTCTGACATGCACATCAAACACGAGTTCTCGAATGTAAAAGGATCTGACCAGCTAAAATATAAAGGCATAACTACTGATCAGCTGGAAGCTTCTTCTGGAACATCTTATTGTATGGATCCTGGCAATGTTCAGCAGAGTTTGCCACTATCCAACTTCTGCATGGAAGGCGACGTCCAATCAAACCCTAGAAACAATCTGACATTTGACTCTAATCTTGATGGTTTAATGTCTGATACTATGCTTTCGAGGGGTTATGATTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTACGGTGGTGCTCCAAGAGACATTGAAACCGAGCTGTCCACTGCTGACATCAGCTCACAGTCGTTTGGATTGCCTGACACACTTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTAATGATACTTCTGGGGTTTTGAACAATGGCTTGCGGGCAAACCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGGTATGATGAACTCCGGTATGATTTGGCAAGAATGTTCGGGATTGAAGGACAACTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTAGATCATGAAAATGACATTCTTCTTGTTGGAGATGACCCTTGGGAGGAATTTGTAAGTTGTGTTCAAAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGTGATTTAGGTAATGTTACAATCCCAAATCAAGCATCCAGTGGAGCAGATAGTGGCAATGCATGGAGGGGACAATATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3435 0.4352 MKAPPNGHLPSSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVTKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNSWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDVEPVVTPFYICPPPFFRQKFPRQPGMPDDESDVENAFKRAMPWLGDEFGMKDASSSGFPGLSLVQWMSMQQNNQFSGGQSGCFPPMLSSNTLHGNLSTDDPSKLLSFQTPLLSAPNHQFNKPNLPNQINQLQQSPASWPQQQQQQQQLPQQQQQQLQQQQQQQQQHLQQQQHQQLQQHQHQQLQSLSQIPMNQFQQQRQQQLPESQSLTLLQQQMTQQLGQQSQKQPQSSQHAIMNNGVIASNQISNQFAQQPVTYAQLQQQQLLSGGMPLQQSIQSVSKNTFPVTTSLPQDSQFQQQIDQQASLLQRQQQQTQLQQSPLQVLQQSQQQRVTPNLPVAQMSQQNTSEQQLQLQFLHKLQQQQQQQQQQFLSTSSPLLQSQFLQQNTHQLSQQLPQLPTSQQHTQQLGINAFSTEKLLNSNNLSSSSHMQSQQVSVNQTLNMQKPLTITRVPSTLTDGEAPSCSTSPSTNNCQISQPNSLKRNQQVPTTIGGILVAEPTSNLIQDLQSKSDMHIKHEFSNVKGSDQLKYKGITTDQLEASSGTSYCMDPGNVQQSLPLSNFCMEGDVQSNPRNNLTFDSNLDGLMSDTMLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPDTLFKPGCSNDVGINDTSGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGADSGNAWRGQYDDNSAASFNR 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00820 1144 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g00820 1144 Pfam AUX/IAA family 1012 1103 IPR033389 -
Vivi1g00820 1144 MobiDBLite consensus disorder prediction 466 499 - -
Vivi1g00820 1144 FunFam Auxin response factor 289 361 - -
Vivi1g00820 1144 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vivi1g00820 1144 Coils Coil 506 526 - -
Vivi1g00820 1144 Gene3D - 1012 1106 - -
Vivi1g00820 1144 SUPERFAMILY CAD & PB1 domains 1030 1095 - -
Vivi1g00820 1144 Gene3D - 289 360 - -
Vivi1g00820 1144 FunFam Auxin response factor 1012 1106 - -
Vivi1g00820 1144 ProSiteProfiles PB1 domain profile. 1017 1110 IPR000270 GO:0005515
Vivi1g00820 1144 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vivi1g00820 1144 MobiDBLite consensus disorder prediction 805 835 - -
Vivi1g00820 1144 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 615 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g00820 1144 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vivi1g00820 1144 FunFam Auxin response factor 124 228 - -
Vivi1g00820 1144 SMART B3_2 126 228 IPR003340 GO:0003677
Vivi1g00820 1144 MobiDBLite consensus disorder prediction 1118 1144 - -
Vivi1g00820 1144 Gene3D - 124 227 IPR015300 -
Vivi1g00820 1144 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00820 Vivi-Chr1 17625384 17631867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00820 1 489 B3 DNA Binding Superfamily AT1G19220 83.265 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g00820 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00820 K14486 - gmx:100816054 1562.74