Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00819 ATGTGCCTGATTGGTAATTTCATCATGCAGCATACCTCACTCAAGCCACTAGGTGATAGAGTACTGGTAAAAGTTAAGGATGCAGAAGAGAAAACTGTGGGTGGAATTATACTGCCATCAACTGCTCAATCAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGGAAGACATTTGGGAAGAACAAAGTGGAAATTAGTGTGAAGGCAGGTGCACAAGTTGTGTACTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATCCATTACACCCGAGAATACAGTTCTGGATTCCGAATTTGCGGGGAACGACTTCAAGGGCAAAGATGGTTCTGA 354 0.4463 MCLIGNFIMQHTSLKPLGDRVLVKVKDAEEKTVGGIILPSTAQSKPQGGEVVAVGEGKTFGKNKVEISVKAGAQVVYSKYAGTEVEFNGSKHLIHYTREYSSGFRICGERLQGQRWF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00819 117 ProSitePatterns Chaperonins cpn10 signature. 14 38 IPR018369 GO:0005524|GO:0006457
Vivi1g00819 117 FunFam 10 kDa chaperonin 10 100 - -
Vivi1g00819 117 SMART Cpn10_2 13 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 CDD cpn10 13 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 Gene3D GroES chaperonin 9 99 IPR037124 GO:0006457
Vivi1g00819 117 PRINTS 10kDa chaperonin signature 36 57 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 PRINTS 10kDa chaperonin signature 70 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 PRINTS 10kDa chaperonin signature 14 29 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 Pfam Chaperonin 10 Kd subunit 14 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 Hamap Co-chaperonin GroES [groES]. 13 105 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 PANTHER 10 KDA HEAT SHOCK PROTEIN 10 96 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vivi1g00819 117 SUPERFAMILY GroES-like 12 96 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00819 Vivi-Chr1 17624342 17625006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00819 10 94 Calmodulin-binding Proteins AT5G20720 78.824 1.18e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00819 K04078 - atr:18433753 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00819 1 17624342 17625006 Vivi1g00819 1 17624342 17625006 ECH
Vivi1g00819 1 17624342 17625006 Vivi4g01962 4 92180303 92182901 PCT