Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00815 ATGCTACCACAAAAGCTAAGACAGAATCCAATTATGCAACACTCTCTCTACCATCATCCAGCTCTTATTACTCCTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTCTATGTGGGCAACATTCATCCTCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCAAGTGCTGGAGCACTTGAAGGTTGCAAGCTTATTCGGAAAGAGAAGTCATCATATGGATTCGTCGACTACTTTGATCGCAGTTCAGCTGCTCTTGCTATTGTAACTCTCAACGGGAGGAATATTTTTGGACAGGCTATCAAAGTTAACTGGGCTTATGCTCGTGGCCAAAGAGAAGACACATCAGGACACTTTCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCTGTATATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGATCCAGGGGATTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGAGTTAACTGGTAAATGGCTTGGCAGTAGACAAATTCGTTGTAATTGGGCCACAAAAGGAGCTAATACCAATGATGAAAAGCAGAGTTCAGATGGCAAAGTTGTTGTGGAGTTAGCTAGTGGAGTGTCTGGGGAGATCACAGAAGAACGGCAGGAAGTAACCAGTGATGACGGTCCTGAGAAGAATCCCCAGTACACCACGGTTTATGTTGGCAACCTTGCTCCAGAGGTTACTTCTGTCGATCTCCATCATCATTTTCATGCCCTCGGCGTTGGAACCATTGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATTCAGATGGGTAATGCCCAGTTTCTGTTCGGTAAACCTATCAAGTGTTCGTGGGGTAGCAAGCCAACTCCTCCAGGAACAGCCTCTACTCCTCTTCCCCCACCTTCTCCGCATGTACCAGGGCCAGGTTTTTCACTTGCCGGTCTTGCAGCGTATGAACGCCAGATGGCTTTGAGCAAAATGAACGGTGCGCACGCCCTTCTGCAACAGCAGAATCAGCATGCTCTAAAGCAGGCAGCCATGGGAATGGGTGCTATTGGAGCTGGGTATGGTGCAGGATTCCCTAATGTTGCCGCCACCCAGAACCTCATGTACTATCAGTAA 1251 0.4684 MLPQKLRQNPIMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAALAIVTLNGRNIFGQAIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINELTGKWLGSRQIRCNWATKGANTNDEKQSSDGKVVVELASGVSGEITEERQEVTSDDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNAQFLFGKPIKCSWGSKPTPPGTASTPLPPPSPHVPGPGFSLAGLAAYERQMALSKMNGAHALLQQQNQHALKQAAMGMGAIGAGYGAGFPNVAATQNLMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00815 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Vivi1g00815 416 Gene3D - 7 129 IPR012677 -
Vivi1g00815 416 Gene3D - 130 224 IPR012677 -
Vivi1g00815 416 SUPERFAMILY RNA-binding domain, RBD 248 341 IPR035979 GO:0003676
Vivi1g00815 416 Gene3D - 232 334 IPR012677 -
Vivi1g00815 416 SMART rrm1_1 47 116 IPR000504 GO:0003723
Vivi1g00815 416 SMART rrm1_1 257 326 IPR000504 GO:0003723
Vivi1g00815 416 SMART rrm1_1 132 205 IPR000504 GO:0003723
Vivi1g00815 416 SUPERFAMILY RNA-binding domain, RBD 127 218 IPR035979 GO:0003676
Vivi1g00815 416 CDD RRM2_PUB1 130 209 - -
Vivi1g00815 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 324 IPR000504 GO:0003723
Vivi1g00815 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vivi1g00815 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Vivi1g00815 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Vivi1g00815 416 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Vivi1g00815 416 FunFam Oligouridylate-binding protein 1C 233 334 - -
Vivi1g00815 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 333 - -
Vivi1g00815 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Vivi1g00815 416 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00815 Vivi-Chr1 17595415 17600602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00815 47 330 Eukaryotic Initiation Factors Gene Family AT2G23350 30.847 1.25e-26 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00815 1 17595415 17600602 Vivi1g00815 1 17595415 17600602 ECH