Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00814 ATGTCGACTTCTTCGGAGAAATCCACGTTTTCTCAAACATGCAACCTCCTCAGCCGATACATCAAACACAATGGTAATTCATGTAACGTAACAAATGTTGTGACACCCAAGAATCTCACAACCAAGGATTTCTTAACTCCAATGTCTAAGGTTAAGGAACCAAAATCTGCGCAATTGACAATGTTTTATAATGGACAAGTTATTGTTTTGGATGATTTTCCGGCTGAGAAAGTGGAAGAGATAAAGTCGATTGCTCAGACACAGTCTTTGGTTACTCCGAATTCTCAACTACCTTGTGGAACAATTGTTGTTGATATGCCAATTGCTAGAAAAGCTTCACTTCTTAGATTCATGGAGAAGAGAAAAAACAGAGTTGCAGCGAAATCACCGTACTATAAAACTATCAAAACAGTTTCTGATCCAGTGAAGGAATCTGAATCTGTTCCTTGGCTTGTGTTAGGCGCTAAATCAACGTGA 477 0.3878 MSTSSEKSTFSQTCNLLSRYIKHNGNSCNVTNVVTPKNLTTKDFLTPMSKVKEPKSAQLTMFYNGQVIVLDDFPAEKVEEIKSIAQTQSLVTPNSQLPCGTIVVDMPIARKASLLRFMEKRKNRVAAKSPYYKTIKTVSDPVKESESVPWLVLGAKST 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00814 158 SMART tify_2 52 87 IPR010399 -
Vivi1g00814 158 Pfam Jas motif 107 132 IPR018467 -
Vivi1g00814 158 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 136 IPR040390 -
Vivi1g00814 158 Pfam tify domain 53 81 IPR010399 -
Vivi1g00814 158 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00814 Vivi-Chr1 17500550 17501458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00814 4 156 Tify Gene Family AT1G19180 29.876 3.54e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi1g00814 tify 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00814 K13464 - gmx:100802800 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00814 1 17500550 17501458 Vivi1g00814 1 17500550 17501458 ECH
Vivi1g00814 1 17500550 17501458 Vivi4g01987 4 95146490 95148955 PCT