Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00802 ATGACAGTGATGAAAATCATGTGGAAATCAATATTTCCAAGCTGTTACAAGGCTGAAGATACTGAATATTCTTCAGCCAAAGCCAAAGAAACAACAAAAGTGGTTGCTACAAAGACAAATTCTTTCAACAGAATCTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATCTCTTTAGCTGGTTCTAATCTCTATGTTTTCACTCTAGCTGAGCTGAAGCTTATTACTCAGACTTTCTCTTCAACGAATTTTCTTGGTGAAGGAGGGTTTGGTCCTGTTCATAAAGGTTTCATTGATGATAAGGTTAGGCATGGACTTGAGCCTCAACCTGTGGCTGTTAAGCTCTTGGATTTGGATGGTTCTCAGGGTCATAAAGAATGGCTGACTGAGGTTGTGTTTCTTGGTCAACTAAGACATGAACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTTTGGTTTATGAGTATTTACCAAGAGGGAGCTTGGAAAATCAACTATTTAGAAGATATTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCGGTCGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGACTCGGATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAAGATGGCCCTGAAGGTGATGACACACATGTTTCAACTAGAGTCATGGGCACTCAGGGTTACGCCGCACCCGAATATATCATGACAGGACATTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTAGTCCTATTGGAGCTACTAACCGGAAGAAGATCAGTGGACAAGGCACGTCCACCAAGAGAACACAATCTAGTGGAATGGGCCAGACCAGTTCTAAACGACGCCCGAAAACTCACCCGAATAATGGATCCAAGGCTCGAAGGCCAGTACTCCGAAATGGGAGCAAGAAAAGCAGCTGCATTAGCTTACCAATGCTTAAGCCACAGACCACGAAACCGTCCTACAATGTCAACCGTAGTTAACACTCTCGAACCTCTTCAAGACTTTGACGATATACCAATAGGCCCATTCGTTTACACAGCTCCGAGCGATGTTAGTAACAACGAAGTCAAGAACGAGAATAATAGCATCGATACACCAAAAGAGAGAAAAAGAGAAAGCACTCATGGAAATCAACATGGCCATAAGAAAGATGGTGAAGAATATTATGATAATCCTAAAGAGAAGAGAAGGGAAAGTAGTGAGAATAATAGAAGACATCATCATCGTCGTCAGAATATTGGACATAGGCATCCATTGAAGTCACCAAAAGAACAAAGACATAATGTACACCAAAGTGGGTCACATTCGCATTCACACTCACCTGATACATCCATTACATCAGAAAGCCAAGGAAATTAA 1461 0.4093 MTVMKIMWKSIFPSCYKAEDTEYSSAKAKETTKVVATKTNSFNRISLTDLSFPSATTLSEDLSISLAGSNLYVFTLAELKLITQTFSSTNFLGEGGFGPVHKGFIDDKVRHGLEPQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHEHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKARPPREHNLVEWARPVLNDARKLTRIMDPRLEGQYSEMGARKAAALAYQCLSHRPRNRPTMSTVVNTLEPLQDFDDIPIGPFVYTAPSDVSNNEVKNENNSIDTPKERKRESTHGNQHGHKKDGEEYYDNPKEKRRESSENNRRHHHRRQNIGHRHPLKSPKEQRHNVHQSGSHSHSHSPDTSITSESQGN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00802 486 ProSiteProfiles Protein kinase domain profile. 86 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00802 486 MobiDBLite consensus disorder prediction 380 486 - -
Vivi1g00802 486 Pfam Protein tyrosine and serine/threonine kinase 90 363 IPR001245 GO:0004672|GO:0006468
Vivi1g00802 486 Gene3D Transferase(Phosphotransferase) domain 1 169 372 - -
Vivi1g00802 486 MobiDBLite consensus disorder prediction 395 435 - -
Vivi1g00802 486 Gene3D Phosphorylase Kinase; domain 1 49 168 - -
Vivi1g00802 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vivi1g00802 486 PANTHER OS01G0588500 PROTEIN-RELATED 35 367 - -
Vivi1g00802 486 SUPERFAMILY Protein kinase-like (PK-like) 62 364 IPR011009 -
Vivi1g00802 486 MobiDBLite consensus disorder prediction 436 457 - -
Vivi1g00802 486 FunFam Serine/threonine-protein kinase BIK1 53 168 - -
Vivi1g00802 486 MobiDBLite consensus disorder prediction 468 486 - -
Vivi1g00802 486 FunFam Probable serine/threonine-protein kinase PBL8 169 379 - -
Vivi1g00802 486 CDD STKc_IRAK 92 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00802 Vivi-Chr1 17244218 17246935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00802 74 363 Glycoside Hydrolase AT3G07070 54.266 6.35e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g00802 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00802 - - mtr:25494166 779.63