Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00778 ATGATGAATGGAAGAAACAGGTATCCTTTTACTCCTTCTCAATGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCTGGTATCAACATTCCACCTGATCTTCTCTTCACTATCAAAAGAAGCTACTTGGAATCACCTCTCACTTCAAGGCTCTCACCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGTAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAGATTCTGTTTCTGCTGTTGCTGTTGCTACTTCATCAATCTTATCAATGACTAAAAATAGCACTAGTCTTGATCCTGATAATAACACTGCAGCACTCACCCCAACCTCTCATCATGATAGTACTACTTACCATTATCCTCAAACTCAACACTCTTCTTATGCTTCTTCTCATCTTCAACACTCTTTTCTCTACAATAATAACCCTCCACCTTCAAGGCCCAGTTTCTCTTTTCAAGACAACAACAGTACTGCTCCCATGTTTCTTGACAGTACTGGCTCTTCCTCTCACAATAACAACAACACTGATTGCAGGTATGTTTATGGACTGAGAGAGGAGGTAGATGAGCATGCTTTCTTCACAGAACCATCTGGTACTATAAGAAGCTTATCAGCTTCATCTATGGATGATCAATGGCAACTCACACCACTTACTATAAGCCCATCTTCCACTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGATCAGAATGAGTACTCTTATTTGCAACTTCAAAGCCTCAGTGACAACATCAACAGCAACAACAACAGCAACAACTCAAATCAAGCACAGCATGATCAAGGTTGCTACATCTCAGGTAATGAAGAAACATTCATGAAAGATGGGAAAGAAGAACCTCAAAAGATTTTTCATCGTTTTTTCGACGAATGGCCACCGAAAAGCAGCAGAAACTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCAACATCATCTCATGATTTCACAACTTTCAGTTCCACTAACCAAAGAGATGGTTGA 1185 0.4025 MMNGRNRYPFTPSQWQELEHQALIYKYMASGINIPPDLLFTIKRSYLESPLTSRLSPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTDSVSAVAVATSSILSMTKNSTSLDPDNNTAALTPTSHHDSTTYHYPQTQHSSYASSHLQHSFLYNNNPPPSRPSFSFQDNNSTAPMFLDSTGSSSHNNNNTDCRYVYGLREEVDEHAFFTEPSGTIRSLSASSMDDQWQLTPLTISPSSTSKQRSCSGLSNDQNEYSYLQLQSLSDNINSNNNSNNSNQAQHDQGCYISGNEETFMKDGKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNQRDG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00778 394 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1g00778 394 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1g00778 394 MobiDBLite consensus disorder prediction 145 226 - -
Vivi1g00778 394 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi1g00778 394 Pfam WRC 78 120 IPR014977 -
Vivi1g00778 394 PANTHER GROWTH-REGULATING FACTOR 5 9 382 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi1g00778 394 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00778 Vivi-Chr1 16801710 16804096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00778 7 120 GRF Transcription Factor Family AT3G13960 71.053 3.66e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi1g00778 WRC 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00778 - - cam:101508073 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00778 1 16801710 16804096 Vivi1g00778 1 16801710 16804096 ECH