Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00774 ATGGGAAGAAGTCCCTGTTGTTCCAAGGAAGGCTTGAATAGAGGTGCTTGGACTGCTCATGAAGACAAAATCCTCACTGATTACATTAACCTTCATGGGGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGCGGAAAAAGTTGTAGACTTCGATGGTTGAATTATCTGAGACCAGATATCAAAAGAGGTAATATATCGTCCGACGAAGAAGAACTTATCATCAGACTTCACAAATTACTCGGAAACAGATGGTCTCTGATAGCTGGAAGATTACCGGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATTTAGGAAAGAAAGTGAAAGATCTGAATCAGCAAAACGCCAAAAATTCCTCTCCTTCCAAGTCGATCTCTGCTAAACCGAAAAACGCAAAGATAACACAGAAACAGAACAATCCTAAGCCAGTGACGCAAAGCTCCCATGTTGTCCGTACAAAAGCTACAAAATGTTCCAAGGTATTATTCATAAACTCGCTTCCTCATTCGTCACCAATGCATGATTTACAGAACAGAGACGAGACAGAGACGAAAACAGAAACAAAACCGTCAATGGTTGTCGATGCTGTGGCGAGTGACTCGATGAGTAACAACGGAAACGGTTTTCTGTCATTAGAGAAAGAACTGTCTGCAGACTTGTTGGTTGATTTCAACATTGGAGATGATATTTGCTTGTCTGAGCTTCTGAACTCGGATTTCTCGACTACGTGCAGTTTCGATTACAATGATCTGTTATCGTCGCCGTGTTCGGATCAGACTCCGATGTTTTCTGATGAGATTTTGAAGAACTGGACCCAATGTGGCTTTGGTGATGAAACTAATGTGTCCAATAATCTTCATTCTTTCACTTCCTTTCTTGAATCCAGTGAAGAAGTTCTAGGAGAATGA 933 0.4094 MGRSPCCSKEGLNRGAWTAHEDKILTDYINLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQQNAKNSSPSKSISAKPKNAKITQKQNNPKPVTQSSHVVRTKATKCSKVLFINSLPHSSPMHDLQNRDETETKTETKPSMVVDAVASDSMSNNGNGFLSLEKELSADLLVDFNIGDDICLSELLNSDFSTTCSFDYNDLLSSPCSDQTPMFSDEILKNWTQCGFGDETNVSNNLHSFTSFLESSEEVLGE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00774 310 FunFam Transcription factor TT2 70 157 - -
Vivi1g00774 310 Gene3D - 70 151 - -
Vivi1g00774 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi1g00774 310 MobiDBLite consensus disorder prediction 182 196 - -
Vivi1g00774 310 SMART sant 13 63 IPR001005 -
Vivi1g00774 310 SMART sant 66 114 IPR001005 -
Vivi1g00774 310 CDD SANT 16 61 IPR001005 -
Vivi1g00774 310 FunFam MYB-related transcription factor 13 66 - -
Vivi1g00774 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi1g00774 310 MobiDBLite consensus disorder prediction 177 196 - -
Vivi1g00774 310 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Vivi1g00774 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi1g00774 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi1g00774 310 CDD SANT 71 112 IPR001005 -
Vivi1g00774 310 Gene3D - 14 66 - -
Vivi1g00774 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi1g00774 310 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi1g00774 310 MobiDBLite consensus disorder prediction 121 158 - -
Vivi1g00774 310 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00774 Vivi-Chr1 16674675 16676021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00774 1 136 MYB Transcription Factor Family AT4G09460 63.768 1.35e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g00774 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00774 K09422 - gmx:100802704 394.43