Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00736 ATGTCGTCACCGAGATCGGTTGCAGTTGCCGTCAGCGGTGGCTCCGGCGCCGCCAAGGGTAGCCGACGAGCTTTGCTGTGGGCGATGAAGAATGTAGTGCCTCAAGCAGATAGGCTTATCTTAGTTCACGTAATCCCTAGAATCACTTCGATTCTATCCCCAGCTGGAGAGTATATTCCCATTTCGGAAGCAGACACCCATGCCTTTGCTGCCTATGTGCAGGATGTGAAACAGAAGTCTGAAGAAATCTTTGTTTCATTCAAAAAACTATGTGAATCAAACACGATAGAAACCTTTTTGCTAGAAGATGACAATCCGGCAAATGCACTTCTTAGCTTTATCTCGGAGTCTGGGGTACAAATATTAGTGCTAGGTTCCGACGACTCAAATTTTATTACAAGGAAGCTAAAAGGACCTGGCATACCGAATACCATTCTAAGATGTGCTCCTGACAACTGTGATGTATATGTTGTAGATAGAGATAGAATTGTATCAAAGTTAGCTGATTCTTCATCTTCACGTTCTCGTGAAGAAGGCCAAAGGTACATCGTGTCAACTCAATTAAATAAATCAGACAATGGTGCTGGCATTAGTGGACAAGTGTCTGGAATCAGTGCATCCTCTGCAGAACTTAAACTTCTAAAAAATTTCAGATTTCTATCAATATCAGAGCGCAGTTACATTGGTCTGCAAACCTCTAGTCGTAGGAATTCATTTGAAAATTCTACCATAAGTGAAGAAGCAAATCCAGATAACTATGGAGACTTTGTTGATACTATCAGTCTCCACTCATTTGATTCCATTGCTTCTGCACATCGTGAGCCGTTAGTCATGGAAGAAGTAGAACAGTTGCAGCTGGAGTTGCAGAATACTATTGCCATGTACAAACAAGTTTGTGAAGAACTGGCCCATGCTCAAAGTAAGGCCCTTTTACTTTCTTCCGAGTCTCTTGAAGAAGCTAAAATTGTAAATGCTTCCTTAAAAAGAGAGGAAACTTTGAGAAAGATTGCCGCTGAAGAGAAAGCAAAGTATTTAAAAGTCATGAAGGAACTCCAGGAGTCAAAAAGTATGTTCGCCAAAGAGTCATATGAAAGGCAAATGGCTGAACTTAATGTCCTTAGAGAATCCATAGAAAAACAGAGAATTGTCGATACATTGCTCTCAAATGACAGGAGATACAGAAAATATACCATGGATGAAATCAAGATCGCTACAAACAACTTGTCTGAGGACTTGGTAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGCAATCTTGATCACACACCAGTTGCTGTAAAGGTTCTGCATCAGGAAACAGTCAACAAGAAAGCGGAGTTTCTGAAAGAGGTAGAGGTTCTTAGTCAACTACACCATCCAAATATGGTTTTATTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTACGAATACCTGGAAAATGGAAGCCTAGAAGACTATATTCTCAACAGAAATGGAAAACCACCACTTCCTTGGTTTTCTCGATTTCGTATAGTTTTTGAAATGGCCTGTGGTCTATCGTTCTTGCATAATTCAAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCCGGAAATATCTTGTTAGACAGAAATTACGTTAGCAAAATTTCAGATGTTGGACTTGCTAAACTCATTTCAGACGCTGTTCCTGACAATATCACAGAGTACAGAGAGTCAGTGCTTGCCGGTACTCTTCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTTCGACCGAAATCAGATACATATGCTTTTGGAGTAATAATTCTTCAGTTGATAACTGCTCGACATGCACGTGGACTTATTACGACTATTGAAAATGCAATTACAAATGGATCCTTTCGTGATATTTTAGATAAATCAGCTGGAGACTGGCCACTGAATGAGACAATTGAATTGACTGAAATTGGCCTTAAATGCACTGCCCTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTACTCAAAAGACTTTCTGATATGGCAAATGCTAGTGTCAAGATAGGAAGAAAGAGTGTATCCACTCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGAGCCGTATATTGCCGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTGAGCAAACACAATGTATCACCAGTAACAAAGCATAAACTCCAGCATTCTGTGTTGACTCCAAATCATACTTTACGTTCTGCAATTCAAGAGTGGAAGTCAGAAGTGGCATTACTTGATCAATAA 2298 0.4043 MSSPRSVAVAVSGGSGAAKGSRRALLWAMKNVVPQADRLILVHVIPRITSILSPAGEYIPISEADTHAFAAYVQDVKQKSEEIFVSFKKLCESNTIETFLLEDDNPANALLSFISESGVQILVLGSDDSNFITRKLKGPGIPNTILRCAPDNCDVYVVDRDRIVSKLADSSSSRSREEGQRYIVSTQLNKSDNGAGISGQVSGISASSAELKLLKNFRFLSISERSYIGLQTSSRRNSFENSTISEEANPDNYGDFVDTISLHSFDSIASAHREPLVMEEVEQLQLELQNTIAMYKQVCEELAHAQSKALLLSSESLEEAKIVNASLKREETLRKIAAEEKAKYLKVMKELQESKSMFAKESYERQMAELNVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIATNNLSEDLVIGEGGYGKVYKCNLDHTPVAVKVLHQETVNKKAEFLKEVEVLSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYILNRNGKPPLPWFSRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLISDAVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDTYAFGVIILQLITARHARGLITTIENAITNGSFRDILDKSAGDWPLNETIELTEIGLKCTALRCRDRPELDTEILPLLKRLSDMANASVKIGRKSVSTPSQYYCPILQEIMDEPYIAADGFTYEYRAIKAWLSKHNVSPVTKHKLQHSVLTPNHTLRSAIQEWKSEVALLDQ 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00736 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 762 IPR013083 -
Vivi1g00736 765 Gene3D HUPs 5 158 IPR014729 -
Vivi1g00736 765 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Vivi1g00736 765 CDD RING-Ubox_WDSUB1-like 692 746 - -
Vivi1g00736 765 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Vivi1g00736 765 SUPERFAMILY RING/U-box 688 759 - -
Vivi1g00736 765 CDD STK_N 6 158 - -
Vivi1g00736 765 Gene3D Transferase(Phosphotransferase) domain 1 481 690 - -
Vivi1g00736 765 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 161 - -
Vivi1g00736 765 Coils Coil 281 301 - -
Vivi1g00736 765 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00736 765 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Vivi1g00736 765 ProSiteProfiles U-box domain profile. 690 763 IPR003613 GO:0004842|GO:0016567
Vivi1g00736 765 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00736 765 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 380 480 - -
Vivi1g00736 765 Coils Coil 360 380 - -
Vivi1g00736 765 Pfam U-box domain 692 759 IPR003613 GO:0004842|GO:0016567
Vivi1g00736 765 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Vivi1g00736 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Vivi1g00736 765 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Vivi1g00736 765 PANTHER OS02G0152300 PROTEIN 7 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00736 Vivi-Chr1 15769178 15775845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00736 6 762 Plant U-box Gene Family AT5G57035 53.836 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi1g00736 PK_Tyr_Ser-Thr 9.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00736 - - gmx:100805896 1215.29