Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00735 ATGTCGTCACCGAGATCGGTTGCAGTTGCCGTCAGCGGTGGCTCCGGCGCCGCCAAGGGTAGCCGACGAGCTTTGCTGTGGGCGATGAAGAATGTAGTGCCTCAAGCAGATAGGCTTATCTTAGTTCACGTAATCCCTAGAATCACTTCGATTCTATCCCCAGCTGGAGAGTATATTCCCATTTCGGAAGCAGACACCCATGCCTTTGCTGCCTATGTGCAGGATGTGAAACAGAAGTCTGAAGAAATCTTTGTTTCATTCAAAAAACTATGTGAATCAAACACGATAGAAACCTTTTTGCTAGAAGATGACAATCCGGCAAATGCACTTCTTAGCTTTATCTCGGAGTCTGGGGTACAAATATTAGTGCTAGGTTCCGACGACTCAAATTTTATTACAAGGAAGCTAAAAGGACCTGGCATACCGAATACCATTCTAAGATGTGCTCCTGACAACTGTGATGTATATGTTGTAGATAGAGATAGAATTGTATCAAAGTTAGCTGATTCTTCATCTTCACGTTCTCGTGAAGGCCAAAGGTACATCGTGTCAACTCAATTAAATAAATCAGACAATGGTGCTGGCATTAGTGGACAAGTGTCTGGAATCAGTGCATCCTCTGCAGAACTTAAACTTCTAAAAAATTTCAGATTTCTATCAATATCAGAGCGCAGTTACATTGGTCTGCAAACCTCTAGTCGTAGGAATTCATTTGAAAATTCTACCATAAGTGAAGAAGCAAATCCAGATAACTATGGAGACTTTGTTGATACTATCAGTCTCCACTCATTTGATTCCATTGCTTCTGCACATCGTGAGCCGTTAGTCATGGAAGAAGTAGAACAGTTGCAGCTGGAGTTGCAGAATACTATTGCCATGTACAAACAAGTTTGTGAAGAACTGGCCCATGCTCAAAGTAAGGCCCTTTTACTTTCTTCCGAGTCTCTTGAAGAAGCTAAAATTGTAAATGCTTCCTTAAAAAGAGAGGAAACTTTGAGAAAGATTGCCGCTGAAGAGAAAGCAAAGTATTTAAAAGTCATGAAGGAACTCCAGGAGTCAAAAAGTATGTTCGCCAAAGAGTCATATGAAAGGCAAATGGCTGAACTTAATGTCCTTAGAGAATCCATAGAAAAACAGAGAATTGTCGATACATTGCTCTCAAATGACAGGAGATACAGAAAATATACCATGGATGAAATCAAGATCGCTACAAACAACTTGTCTGAGGACTTGGTAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGCAATCTTGATCACACACCAGTTGCTGTAAAGGTTCTGCATCAGGAAACAGTCAACAAGAAAGCGGAGTTTCTGAAAGAGGTAGAGGTTCTTAGTCAACTACACCATCCAAATATGGTTTTATTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTACGAATACCTGGAAAATGGAAGCCTAGAAGACTATATTCTCAACAGAAATGGAAAACCACCACTTCCTTGGTTTTCTCGATTTCGTATAGTTTTTGAAATGGCCTGTGGTCTATCGTTCTTGCATAATTCAAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCCGGAAATATCTTGTTAGACAGAAATTACGTTAGCAAAATTTCAGATGTTGGACTTGCTAAACTCATTTCAGACGCTGTTCCTGACAATATCACAGAGTACAGAGAGTCAGTGCTTGCCGGTACTCTTCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTTCGACCGAAATCAGATACATATGCTTTTGGAGTAATAATTCTTCAGTTGATAACTGCTCGACATGCACGTGGACTTATTACGACTATTGAAAATGCAATTACAAATGGATCCTTTCGTGATATTTTAGATAAATCAGCTGGAGACTGGCCACTGAATGAGACAATTGAATTGACTGAAATTGGCCTTAAATGCACTGCCCTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTACTCAAAAGACTTTCTGATATGGCAAATGCTAGTGTCAAGATAGGAAGAAAGAGTGTATCCACTCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGAGCCGTATATTGCCGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTGAGCAAACACAATGTATCACCAGTAACAAAGCATAAACTCCAGCATTCTGTGTTGACTCCAAATCATACTTTACGTTCTGCAATTCAAGAGTGGAAGTCAGAAGTGGCATTACTTGATCAATAA 2295 0.4044 MSSPRSVAVAVSGGSGAAKGSRRALLWAMKNVVPQADRLILVHVIPRITSILSPAGEYIPISEADTHAFAAYVQDVKQKSEEIFVSFKKLCESNTIETFLLEDDNPANALLSFISESGVQILVLGSDDSNFITRKLKGPGIPNTILRCAPDNCDVYVVDRDRIVSKLADSSSSRSREGQRYIVSTQLNKSDNGAGISGQVSGISASSAELKLLKNFRFLSISERSYIGLQTSSRRNSFENSTISEEANPDNYGDFVDTISLHSFDSIASAHREPLVMEEVEQLQLELQNTIAMYKQVCEELAHAQSKALLLSSESLEEAKIVNASLKREETLRKIAAEEKAKYLKVMKELQESKSMFAKESYERQMAELNVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIATNNLSEDLVIGEGGYGKVYKCNLDHTPVAVKVLHQETVNKKAEFLKEVEVLSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYILNRNGKPPLPWFSRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLISDAVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDTYAFGVIILQLITARHARGLITTIENAITNGSFRDILDKSAGDWPLNETIELTEIGLKCTALRCRDRPELDTEILPLLKRLSDMANASVKIGRKSVSTPSQYYCPILQEIMDEPYIAADGFTYEYRAIKAWLSKHNVSPVTKHKLQHSVLTPNHTLRSAIQEWKSEVALLDQ 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00735 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Vivi1g00735 764 ProSitePatterns Protein kinases ATP-binding region signature. 413 434 IPR017441 GO:0005524
Vivi1g00735 764 SUPERFAMILY Protein kinase-like (PK-like) 390 662 IPR011009 -
Vivi1g00735 764 Coils Coil 359 379 - -
Vivi1g00735 764 Gene3D HUPs 5 158 IPR014729 -
Vivi1g00735 764 SMART serkin_6 407 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00735 764 SMART Ubox_2 693 755 IPR003613 GO:0004842|GO:0016567
Vivi1g00735 764 Gene3D Phosphorylase Kinase; domain 1 386 479 - -
Vivi1g00735 764 PANTHER OS02G0152300 PROTEIN 7 754 - -
Vivi1g00735 764 SUPERFAMILY RING/U-box 687 758 - -
Vivi1g00735 764 CDD STK_N 6 158 - -
Vivi1g00735 764 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 479 - -
Vivi1g00735 764 ProSiteProfiles U-box domain profile. 689 762 IPR003613 GO:0004842|GO:0016567
Vivi1g00735 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 161 - -
Vivi1g00735 764 Pfam U-box domain 691 758 IPR003613 GO:0004842|GO:0016567
Vivi1g00735 764 Pfam Protein tyrosine and serine/threonine kinase 412 663 IPR001245 GO:0004672|GO:0006468
Vivi1g00735 764 Coils Coil 280 300 - -
Vivi1g00735 764 ProSiteProfiles Protein kinase domain profile. 407 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00735 764 Gene3D Transferase(Phosphotransferase) domain 1 480 689 - -
Vivi1g00735 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 761 IPR013083 -
Vivi1g00735 764 CDD RING-Ubox_WDSUB1-like 691 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00735 Vivi-Chr1 15769178 15775846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00735 6 761 Plant U-box Gene Family AT5G57035 53.964 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi1g00735 PK_Tyr_Ser-Thr 9.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00735 - - gmx:100805896 1202.58