Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00730 ATGTTGGGTGACGCCACGAACTGGAACGAAGACTTGTACAGAGAAACCGTATTAAAGGAAAGAGAAATTCAAACCCAAACCGTTTTCAGAACTGCTTGGTCCCCCTCTCAATCTCAAACCCCTAATCTCAACTCTCTCATCGTCGCCTCCAGCGACGGTTCCATCGCCTCTTACTCCATCGCTTCCACCATCTCTGCTTCCAAGCTCAAAAATCCATTTGGTTTAATCAATGCTGATACGGATAGTTTATTGGCTGAGCCAGATTGCTTTTTTCAAGCGCATGGGGGATCTGCATATGATGTCAAGTTCTATGGTGATGATGATAATGCAATTTTGATGAGTTGTGGTGATGATGGCCGGGTTCGAGGATGGAGATGGAAGGAACTTACAAGCTCTAAATATGATATTACTTCAGAAGGAAATAATATCAAGCCCGTCCTTGATGTGGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGCAGGATCTGTTTTTGCTGCGTCTGGTGATTCTTGTGCGTATTGTTGGGATGTGGAAACTGGTAAATTAAAAACAGTATTCAAGGGTCACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATTACAGGTTCAGAGGACGGGACAACACGAATTTGGGATTGCAAAACTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCCATGTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAAAGCTGGTTGGCATGCGGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCCTCAGAGTGCACATTAAAATTTTCCACTCAAGCTTCTGTACAAGACATGTTATTTGACAATAATCAAATTCTGACAGTTGGCGCGGATCCTATACTTAATCGCTTTGACATGAACGGTGAAATCGTTTCACAAATACCATGTGCTTCTCCATCAGCTTTTTCTATCTCTTTACATCCAGCAGGGGTTATTGCGGTTGGAGGTTACGGATGTCTTGTGGATGTTATCTCGCAATTTGGCAGCCACATGTGCACATTTCGTTGCCAATGTGTTTAG 1131 0.4288 MLGDATNWNEDLYRETVLKEREIQTQTVFRTAWSPSQSQTPNLNSLIVASSDGSIASYSIASTISASKLKNPFGLINADTDSLLAEPDCFFQAHGGSAYDVKFYGDDDNAILMSCGDDGRVRGWRWKELTSSKYDITSEGNNIKPVLDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKTGKCIQVIDPAKHLKLKGPMSWVGSVALDASESWLACGSGRNISLWNLPASECTLKFSTQASVQDMLFDNNQILTVGADPILNRFDMNGEIVSQIPCASPSAFSISLHPAGVIAVGGYGCLVDVISQFGSHMCTFRCQCV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00730 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 234 - -
Vivi1g00730 376 SUPERFAMILY WD40 repeat-like 40 362 IPR036322 GO:0005515
Vivi1g00730 376 SMART WD40_4 195 234 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 286 322 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 324 362 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 84 125 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 14 59 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 245 283 IPR001680 GO:0005515
Vivi1g00730 376 SMART WD40_4 154 192 IPR001680 GO:0005515
Vivi1g00730 376 Pfam WD domain, G-beta repeat 252 283 IPR001680 GO:0005515
Vivi1g00730 376 Pfam WD domain, G-beta repeat 197 234 IPR001680 GO:0005515
Vivi1g00730 376 Gene3D - 152 374 IPR015943 GO:0005515
Vivi1g00730 376 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 375 IPR042626 -
Vivi1g00730 376 Gene3D - 8 138 IPR015943 GO:0005515
Vivi1g00730 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00730 Vivi-Chr1 15742116 15748104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00730 170 239 Eukaryotic Initiation Factors Gene Family AT2G46280 28.571 7.55e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00730 K13175 K03257 gmx:100820024 644.425