Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00726 ATGTTGGGTGACGCCACGAACTGGAACGAAGACTTGTACAGAGAAACCGTATTAAAGGAAAGAGAAATTCAAACCCAAACCGTTTTCAGAACTGCTTGGTCCCCCTCTCAATCTCAAACCCCTAATCTCAACTCTCTCATCGTCGCCTCCAGCGACGGTTCCATCGCCTCTTACTCCATCGCTTCCACCATCTCTGCTTCCAAGCTCAAAAATCCATTTGGTTTAATCAATGCTGATACGGATAGTTTATTGGCTGAGCCAGATTGCTTTTTTCAAGCGCATGGGGGATCTGCATATGATGTCAAGTTCTATGGTGATGATGATAATGCAATTTTGATGAGTTGTGGTGATGATGGCCGGGTTCGAGGATGGAGATGGAAGGAACTTACAAGCTCTAAATATGATATTACTTCAGAAGGTCGTAGAAATAATATCAAGCCCGTCCTTGATGTGGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGCAGGATCTGTTTTTGCTGCGTCTGGTGATTCTTGTGCGTATTGTTGGGATGTGGAAACTGGTAAATTAAAAACAGTATTCAAGGGTCACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATTACAGGTTCAGAGGACGGGACAACACGAATTTGGGATTGCAAAACTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCCATGTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAAAGCTGGTTGGCATGCGGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCCTCAGAGTGCACATTAAAATTTTCCACTCAAGCTTCTGTACAAGACATGTTATTTGACAATAATCAAATTCTGACAGTTGGCGCGGATCCTATACTTAATCGCTTTGACATGAACGGTGAAATCGTTTCACAAATACCATGTGCTTCTCCATCAGCTTTTTCTATCTCTTTACATCCAGCAGGGGTTATTGCGGTTGGAGGTTACGGATGTCTTGTGGATGTTATCTCGCAATTTGGCAGCCACATGTGCACATTTCGTTGCCAATGTGTTTAG 1137 0.4292 MLGDATNWNEDLYRETVLKEREIQTQTVFRTAWSPSQSQTPNLNSLIVASSDGSIASYSIASTISASKLKNPFGLINADTDSLLAEPDCFFQAHGGSAYDVKFYGDDDNAILMSCGDDGRVRGWRWKELTSSKYDITSEGRRNNIKPVLDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKTGKCIQVIDPAKHLKLKGPMSWVGSVALDASESWLACGSGRNISLWNLPASECTLKFSTQASVQDMLFDNNQILTVGADPILNRFDMNGEIVSQIPCASPSAFSISLHPAGVIAVGGYGCLVDVISQFGSHMCTFRCQCV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00726 378 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 377 IPR042626 -
Vivi1g00726 378 Pfam WD domain, G-beta repeat 199 236 IPR001680 GO:0005515
Vivi1g00726 378 Pfam WD domain, G-beta repeat 254 285 IPR001680 GO:0005515
Vivi1g00726 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Vivi1g00726 378 Gene3D - 8 141 IPR015943 GO:0005515
Vivi1g00726 378 SMART WD40_4 326 364 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 247 285 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 14 59 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 84 125 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 288 324 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 197 236 IPR001680 GO:0005515
Vivi1g00726 378 SMART WD40_4 156 194 IPR001680 GO:0005515
Vivi1g00726 378 Gene3D - 152 376 IPR015943 GO:0005515
Vivi1g00726 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Vivi1g00726 378 SUPERFAMILY WD40 repeat-like 40 364 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00726 Vivi-Chr1 15714235 15720223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00726 172 241 Eukaryotic Initiation Factors Gene Family AT2G46280 28.571 7.96e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00726 K13175 K03257 gmx:100820024 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00726 1 15714235 15720223 Vivi1g00726 1 15714235 15720223 ECH