Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00719 ATGGAATCTCGTATTGTGGATAAGTTTCGTCTTGGTAGAAAGATCGGTAGAGGTTCCTTTGGAGAGATCTACTTAGGTACTAATATTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAATATGTCAAGACTAAGCATCCTCAGTTGCTGTATGAGTCCAAGGTGTACAAAATTCTCCAGGGAGGAACCGGAACTCCAAATGTTAGATGGTTTGGAGTGGTGGGAGATTACAATGCTTTAGTGATGGATCTGCTGGGACAAAGTCTTGAAGAACTTTTTAACTTTTGTAGTAGAAGGTTATCACTAAAGACAGTTCTTATGCTTGCTGATCAAATGATTAACCGTGTTGAGTTCATTCATTCGAAGTCATTTATACACGGAGATATCAAACCAGATAATTTTGTAATGGGGTTAGGAAGGCGTGAGAAGAAGGTTTATGCTATTGATTATGGTCTGGCTAAGAAATACAGAGATAGTTCAACCCATCGACACATTCCTTACAGGGATAATAGAAATTTGACCGGAACTGCAAGATATGCTAGCCTGAATGCTCACCTTGGGATTGAACAAAGTCGAAGAGATGATTTAGAGGCTCTTGGTTATGTTTTGATATACTTCCTAAGGGGAAGTCTTCCTTGGCAGGGACTTGGAGTAGGGACCAAGAAACAGAAGTATGAGAAAATTAGAGAAAAAAAGGTTTCTACATCGATTGAAGCCTTGTGTCAGGGTTATCCAACAGAAATTGCATTATACTTCCATTACTGCCGCTCATTAAGGTTTGATGAGAAGCCAGATTACGCTTATCTCAAAAGGATATTCCGCGACCTTTTTATTCGTGAAGGATTCCAGTTTGATTACGTGTTTGACTGGACTATCTTGAGTTATCAGCAATCACAGCTTACTACACCTCCAGCACCGGCCATCCTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTAGATCATCAAGGCGAGTTGCTGTTTCTAGTAGTCGTGATGCAGTTGTTGGTGCTGAATCAGATATCCGTACACGCACTGCTGAGGCAAGCCCTGGAGCAGCACACAGAATTTTTGGTAGGCAAAGAAGTTTACCAATTGGACCTTCTGATCCCCAGAGAGTAGCACGGGCTTGGAGAAATGTTTCTCAAGCCAATAATTATGAAAGTGCCCTTAGGAGCATGGAGGGTTTGCAGTTAGAAAATGATGGGAGGACCCATTTTTAA 1221 0.4128 MESRIVDKFRLGRKIGRGSFGEIYLGTNIQTNEEVAIKLEYVKTKHPQLLYESKVYKILQGGTGTPNVRWFGVVGDYNALVMDLLGQSLEELFNFCSRRLSLKTVLMLADQMINRVEFIHSKSFIHGDIKPDNFVMGLGRREKKVYAIDYGLAKKYRDSSTHRHIPYRDNRNLTGTARYASLNAHLGIEQSRRDDLEALGYVLIYFLRGSLPWQGLGVGTKKQKYEKIREKKVSTSIEALCQGYPTEIALYFHYCRSLRFDEKPDYAYLKRIFRDLFIREGFQFDYVFDWTILSYQQSQLTTPPAPAILSSANVLGQSSRSSRRVAVSSSRDAVVGAESDIRTRTAEASPGAAHRIFGRQRSLPIGPSDPQRVARAWRNVSQANNYESALRSMEGLQLENDGRTHF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00719 406 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00719 406 FunFam CK1 family protein kinase 1 322 - -
Vivi1g00719 406 Gene3D Transferase(Phosphotransferase) domain 1 1 330 - -
Vivi1g00719 406 CDD STKc_CK1_delta_epsilon 8 282 - -
Vivi1g00719 406 Pfam Protein kinase domain 10 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00719 406 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vivi1g00719 406 FunFam Putative Casein kinase I 1 85 - -
Vivi1g00719 406 PANTHER CASEIN KINASE-RELATED 8 345 - -
Vivi1g00719 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi1g00719 406 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Vivi1g00719 406 SMART serkin_6 9 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00719 Vivi-Chr1 15644461 15649116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00719 8 213 EF-hand Containing Proteins AT2G17890 25.822 2.73e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi1g00719 Pkinase 3.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00719 K02218 - gmx:100785851 659.448