LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00715	ATGGCGGTGGCTCACGGTGGATGCGGCGGTGAAATCGGTGGCGTCAGTTCCAACCTAATCCCATCAGTAAAAGCAGAGTTATTCGACGACAGTGCCGGTTCAACTTCACCTTGTTACGACGACGTTTTAAGCGAAAGAAAAGACTCGGTAGTGACCGAAGAAGAAGGTGCTACAGCCTCTCACGCTATTCACATCAAAGAAGAGGTTGCTGAAGACGACGGTGCTAACACTTCGTCTTCGATGGAGTTCCCGAAACCAATGGCCGGGTTGCATGAGGTTGGTCCACCGCCGTTTCTTAAGAAGACGTATGAAATGGTGGAGGATCCCGAAACTGATCCGATTGTTTCGTGGAGCGGTTCTCGTGATAGTTTCATTGTTTGGGATTATCATGAATTCTCCAAAGTTCTTCTTCCTAAGTATTTTAAGCACAATAATTTCTCTAGCTTCATTCGCCAGCTCAATACCTATGGGTTTAGGAAGATTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTTCAAGGAGGGAAGAAGCATTTGTTGAAGACCATAAGAAGGAGAAGTAAGTACAACAAGCTACATCAAGGAGGATTCAATTTGATGACACCTGGTGTTGAATCTGAAGTGGAGAAACTGAAAAAGGATCAGAACATGTTAAAATTGGAAATTCTGAGGCTAAGGCAGCAACAAGAGAATTCAAATATTCAGCTCACAAATGTTAATGAGCGAGTTCGTCGTGCCGAGATGAAGCAATATCAGATGATATATTTCCTCACCAAAATGGCTAGAAAGCCGGTGTTTATGGATCAGTTAATTCAAAAGATGAAGCGGAAAAAAGAGGTTGATGGTAGTATAGATATGGTTAAAAGGCCTAGATTACTTGGAACACAAGGTATTGGTGTTGATTATAGGTCTCAAGGTGGTGAACAGTTTGCTACTTTGCAAACTGATTTGAATGGACTTTTTACTGAAAATGTGAACATGAACATTGGTAGAATGGAAGCACCGGTTTCGGATCCATTGCAGAATGGATTTGCTAGCTCTTTACATGAAATGAGGGCTTGTGGCGATTCTAGACAAAATGTACAAGATGTTTCTTCTGCTTATCAAGATATGTCAGAGAAACTATTGAGTGAAAATTCTGTTGTTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAGTTAGAGGATTTGATTAGTAAACCTGTGGATTGGGGTGGATCTGCTAATGGTTTGATTGGACAAACTAGTTGA	1263	0.4141	MAVAHGGCGGEIGGVSSNLIPSVKAELFDDSAGSTSPCYDDVLSERKDSVVTEEEGATASHAIHIKEEVAEDDGANTSSSMEFPKPMAGLHEVGPPPFLKKTYEMVEDPETDPIVSWSGSRDSFIVWDYHEFSKVLLPKYFKHNNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKTIRRRSKYNKLHQGGFNLMTPGVESEVEKLKKDQNMLKLEILRLRQQQENSNIQLTNVNERVRRAEMKQYQMIYFLTKMARKPVFMDQLIQKMKRKKEVDGSIDMVKRPRLLGTQGIGVDYRSQGGEQFATLQTDLNGLFTENVNMNIGRMEAPVSDPLQNGFASSLHEMRACGDSRQNVQDVSSAYQDMSEKLLSENSVVDEEMDVNDSNIYLELEDLISKPVDWGGSANGLIGQTS	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00715	420	Gene3D	-	91	188	IPR036388	-
	Vivi1g00715	420	SMART	hsfneu3	94	187	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	MobiDBLite	consensus disorder prediction	46	73	-	-
	Vivi1g00715	420	MobiDBLite	consensus disorder prediction	46	79	-	-
	Vivi1g00715	420	Pfam	HSF-type DNA-binding	98	187	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	ProSitePatterns	HSF-type DNA-binding domain signature.	137	161	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	84	332	IPR027725	-
	Vivi1g00715	420	PRINTS	Heat shock factor (HSF) domain signature	136	148	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	PRINTS	Heat shock factor (HSF) domain signature	149	161	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	PRINTS	Heat shock factor (HSF) domain signature	98	121	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi1g00715	420	Coils	Coil	209	229	-	-
	Vivi1g00715	420	FunFam	Heat shock transcription factor 1	91	188	-	-
	Vivi1g00715	420	SUPERFAMILY	"Winged helix" DNA-binding domain	94	187	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g00715	Vivi-Chr1	15557208	15559423	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g00715	84	327	HSF	AT2G26150	48.810	3.36e-77	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vivi1g00715		HSF_DNA-bind	3.6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g00715	K09419		-	gmx:100818430	527.324