Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00697 ATGGCCCCTAGAATCCTACTCTGCGGCGACGTTTTCGGTCGCCTTAATCAGCTCTTCAAACGCGTCTCATCGGTGAACAAATCGGCCGGCCCATTCGACGCCCTCTTGTGCGTCGGCCAATTCTTCCCTGACTCGCCGGAGCTGCTTGATGATTTCATGTCATACATTGAAGGCGGGTCCCACATTCCCCTCCCAACGTACTTCATCGGCGACTACGGAGTCGCCGCCCCTAAAGTTTTGATGGCGGCTACTAAGGATTCTGCCAACCGTGGTTTCAAGATGGATGGTTTCAAGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCAACCTCTTCGGGTTATCTGTTACCTACTTATCTGGTAGGAAATCGTTAATAGTTCAGCAGTTTGGAACTTTTAGTGAAGATGATGTTGATGCACTGCGTGCGATAGCCGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAATGAATGGCCAAGTGGGGTTACGAATGGAGCAGCGGCTTCAGACATTCCTGCTGAATTCTCGGAATCTAGTGGCAGCGATTCAACCATATCGGAGTTAGTACAAGAGATTAAACCACGCTATCATATTGCAGGTTCTAAAGGTATATACTATTCCCGCGAACCATATTCCAATGTTGATGCCATGCACATTACCCGTTTCATTGGGCTTGCATCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCCGCATCCACCATGTCTTCAACGGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACGTCTACGAAGGAAAACGCTTCTCCTAATGACACCGCAAAGAGATCTGCTGACTCTGATTCTCAACATTGGAGATATGATGTTTCGCAAAAACGACAGAAACATGAAGCTGGAGATAAGTTATGTTTCAAATTTGTATCTTCTGGCTCTTGTCTACGGGGAGACACATGCAATTTCCGACATGACACAGATGCAAGGGAGCACTGTTTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCAAGGAAGCCTGGATCAGAATATACAAGGTCTAGCAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAGTGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTATCTAGCACTGGCTAAAGGTCCACTTGTTGAAGATCATGTGCTGATAGTACCTGTTGAGCATATGCCAAATACTTTATCTTTGTCTTCTGAATCTGAAGCCGAGCTCTTACGATTTCAGAACAGTCTCAAGAGATGTTTCAAGAACCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGCGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGATTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGTAAAGAAATTCGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACACAAACTGACGGGAATTTAAGCTTGTTCTATGCTGAAATCCCAGGAGGCACAATTCTGCTGCACCATGTTGAGGAGAAAGACACGTTTCCTGCCCAGTTTGGGCGTGAGGTTCTGGCGGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATCACAAACATAACAAAGATGATGAGATGAAAATCGTTGAAGGTTTCAAGGACCGGTTTCAAGAATATGATCCAAACCATTGA 1809 0.44 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDDFMSYIEGGSHIPLPTYFIGDYGVAAPKVLMAATKDSANRGFKMDGFKVCDNLYWLKGSGKFNLFGLSVTYLSGRKSLIVQQFGTFSEDDVDALRAIAEEPGVVDLFLTNEWPSGVTNGAAASDIPAEFSESSGSDSTISELVQEIKPRYHIAGSKGIYYSREPYSNVDAMHITRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTSTKENASPNDTAKRSADSDSQHWRYDVSQKRQKHEAGDKLCFKFVSSGSCLRGDTCNFRHDTDAREHCLRGVCFDFLNKGKCERGPDCRFRHSLQDEGDKHPSRKPGSEYTRSSRSRECWFCLSSPSVESHLIISIGENYYLALAKGPLVEDHVLIVPVEHMPNTLSLSSESEAELLRFQNSLKRCFKNQEKEVIFFEWASIRGTHANLQAIPIPSSKAVMIEKAFNLAAQKLGFEFVVKKFDSISDGRKFLKTQTDGNLSLFYAEIPGGTILLHHVEEKDTFPAQFGREVLAGLLNMADNADWRNHKHNKDDEMKIVEGFKDRFQEYDPNH 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00697 602 Gene3D - 294 366 - -
Vivi1g00697 602 Gene3D - 383 504 IPR036265 -
Vivi1g00697 602 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Vivi1g00697 602 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Vivi1g00697 602 ProSiteProfiles Zinc finger C3H1-type profile. 342 365 IPR000571 GO:0046872
Vivi1g00697 602 Pfam Protein similar to CwfJ C-terminus 1 383 496 IPR006768 -
Vivi1g00697 602 MobiDBLite consensus disorder prediction 262 284 - -
Vivi1g00697 602 CDD MPP_CWF19_N 6 232 - -
Vivi1g00697 602 SMART c3hfinal6 339 364 IPR000571 GO:0046872
Vivi1g00697 602 SMART c3hfinal6 307 332 IPR000571 GO:0046872
Vivi1g00697 602 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 601 IPR040194 -
Vivi1g00697 602 SUPERFAMILY HIT-like 386 460 IPR036265 -
Vivi1g00697 602 FunFam Zinc finger CCCH domain-containing protein 59 366 491 - -
Vivi1g00697 602 Pfam Protein similar to CwfJ C-terminus 2 515 599 IPR006767 -
Vivi1g00697 602 MobiDBLite consensus disorder prediction 285 300 - -
Vivi1g00697 602 MobiDBLite consensus disorder prediction 262 300 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g00697 CwfJ_C_1 5.5e-39 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00697 K24939 - gmx:100782106 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00697 1 14962984 15062052 Vivi1g00697 1 14962984 15062052 ECH