Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00692 ATGTTACCCCCACCTTATCACCTTATGCCTCTGGATCTTAATCAAGATCAAAACCATGATCATCTTTCTAGTCCAACTCATCTTGCTTCTTCTTCTTCATTTTCTTCTCCATCATCGTCTTATCCTATCCTACCAGATCAAGTTCTAGAAGAACCGTCTTATTACTTCGAAACAAACCGTGATCATGTTCGTGAAGAGGTTAAGAAGATTATTATTCCATCTAGTGGATCAACTGCAGAAACCCATGAGAGCAGCAGAAGCAAACATAAGCTAACAATTCGCTGGAAGAAAGAAGAAACTAGTACCGAAGAAACTCAAAATATTCAAGCAGATTATGATCAGGAGGATGGTGCTTCAATGAAGTGGATGTCATCAAAGATGAGAATAATGAAAAAGATGATGGTTTCTGATCCTCAAACCGGTGATATTAAGCCGAATAAGTTTGAAGATCAACAACAACAACAACAACAAGGAACCGATAACAGCAGCAACAACAGCAACAACAATTACTCGAGCTATAATAGCCCTACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTCTGGAGGAGTGGACCTAGAGGCCCCAAGTCACTTTGCAACGCGTGTGGGATTAGACAAAGGAAGGCGAGGCGCGCCATGGCATTGGCTGCAGCGTCTGAAAACGGTACCACAATTGCTGATCACCAAACATCTTCTGCGAAGAGAAAAAAATTGCAGAAGAAAAAAGAGAATAAGTCCAAAATGGAGTATGAATGTTCACCGCATATGAAAAAGAAACGCAAGCTTGAAGCAACAAAACCATCTCAAATTAGTAGAAACAAGTTCATCACTTTCGAGGATTTGAGATTAAGCTTAAGCCAGAATTTAGCAGTTCAACAAGTCTTCCCTCAGGATGAGAAGGAGGCTGCAATCCTCCTTATGGCTTTATCTTATGGACTAGTCCATGGTTAA 963 0.4081 MLPPPYHLMPLDLNQDQNHDHLSSPTHLASSSSFSSPSSSYPILPDQVLEEPSYYFETNRDHVREEVKKIIIPSSGSTAETHESSRSKHKLTIRWKKEETSTEETQNIQADYDQEDGASMKWMSSKMRIMKKMMVSDPQTGDIKPNKFEDQQQQQQQGTDNSSNNSNNNYSSYNSPTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMALAAASENGTTIADHQTSSAKRKKLQKKKENKSKMEYECSPHMKKKRKLEATKPSQISRNKFITFEDLRLSLSQNLAVQQVFPQDEKEAAILLMALSYGLVHG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00692 320 Pfam GATA zinc finger 181 214 IPR000679 GO:0006355|GO:0043565
Vivi1g00692 320 ProSitePatterns GATA-type zinc finger domain. 181 206 IPR000679 GO:0006355|GO:0043565
Vivi1g00692 320 MobiDBLite consensus disorder prediction 74 108 - -
Vivi1g00692 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 216 - -
Vivi1g00692 320 SMART GATA_3 175 226 IPR000679 GO:0006355|GO:0043565
Vivi1g00692 320 MobiDBLite consensus disorder prediction 82 104 - -
Vivi1g00692 320 Gene3D - 177 221 IPR013088 GO:0006355|GO:0008270
Vivi1g00692 320 MobiDBLite consensus disorder prediction 247 270 - -
Vivi1g00692 320 FunFam GATA transcription factor 21 175 255 - -
Vivi1g00692 320 MobiDBLite consensus disorder prediction 16 40 - -
Vivi1g00692 320 CDD ZnF_GATA 180 210 IPR000679 GO:0006355|GO:0043565
Vivi1g00692 320 MobiDBLite consensus disorder prediction 227 270 - -
Vivi1g00692 320 MobiDBLite consensus disorder prediction 145 174 - -
Vivi1g00692 320 ProSiteProfiles GATA-type zinc finger domain profile. 179 211 IPR000679 GO:0006355|GO:0043565
Vivi1g00692 320 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 320 - -
Vivi1g00692 320 MobiDBLite consensus disorder prediction 1 40 - -
Vivi1g00692 320 MobiDBLite consensus disorder prediction 137 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00692 Vivi-Chr1 14869398 14871124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00692 11 320 C2C2-Gata Transcription Factor Family AT5G56860 35.025 9.38e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g00692 GATA 5.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00692 - - mtr:25494244 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00692 1 14869398 14871124 Vivi1g00692 1 14869398 14871124 ECH
Vivi1g00692 1 14869398 14871124 Vivi4g02301 4 113983846 113985450 PCT