Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00683 ATGTCTCGAAGATTACTTCAACTCCAAGAAACACCTCCTTCATCTTCCTCCTCCTCCTCCTCCTCGCCCCCTGCGCGCCATGTCTCGGGAGCTTTGTTATTTTTACTTGGAGGGATAGTAGTTCTCATCATATTGCTCATTCTTCTCTGTGTATTCTGGAAGCGTTTTAAACGTGTCCCTCCAGAACTACCAGAGAAGAAAGCTTCGCCGCAAAGTCAGAGTCAGAATCATGGATTCATGGAGTTCATCAGTGGAAACCTTAGGACTATTAGCTACTTTGATTTCCAGACACTGAGAAAGGCCACCAAGAATTTCCATCGTAGAAACCTTCTAGGAAGTGGCGGATTTGGCCCGGTATATCAGGGAAAGTTGGTAGATGGAAGACTAGTTGCTTGTAAGAAACTGTCTCTTGATAAATCTCATCAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAGCACAAAAACCTCGTTCGCCTTCTCGGCTGTTGCTCAGATGGACCTCAAAGGATACTTGTTTACGAATACATGAAGAACAGAAGTTTAGACCTCTTTGTTCATGGGAATACTGATGAATTTCTTACTTGGAGCACAAGATTTCAAATTATTCTTGGAGTAGCGCGAGGGTTGCAATACCTTCACGAGGATTCGCATGTGAGAATTGTTCACCGCGATATCAAAGCAAGTAATATTCTTCTTGACGAAAAGTTTCAGCCGAGGATTGGTGATTTTGGACTAGCTAGATTCTTTCCTGAAGACCAAGCTTACCTTAGCACTCAATTCGCCGGAACATTAGGCTATACTGCTCCTGAATATGCAATCAGAGGAGAGTTATCTGAAAAGGCAGACATATATAGTTTCGGAGTTCTCGTGCTTGAAATAATCAGCTGTAGAAAAAACACAGATCTCACTTTACCCTCAGAAATGCAGTACCTTCCTGAATACGCATGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTATAGATCCAAAGCTGAGAGAAAAAGGATATGTAGAAAAGGATGTTATGCAAGCATTTCATGTGGCATTTTTGTGTCTTCAGCCACATCCAGATTTGAGACCTGCAATGTCACAGATTGTAGCATTGTTGACATTTAAAATTGATATGGTTACAACACCAATGAGGCCGGCTTTTCTCGATCGAAGGCGCGTAATGGATGATGAGAATCACTCTTGGGAAGTCATATCTGAGGTTTTACAAACTCCTGTAGCTAGTGATTCTATGTTGTAA 1269 0.4184 MSRRLLQLQETPPSSSSSSSSSPPARHVSGALLFLLGGIVVLIILLILLCVFWKRFKRVPPELPEKKASPQSQSQNHGFMEFISGNLRTISYFDFQTLRKATKNFHRRNLLGSGGFGPVYQGKLVDGRLVACKKLSLDKSHQGEREFLAEVRMITSIQHKNLVRLLGCCSDGPQRILVYEYMKNRSLDLFVHGNTDEFLTWSTRFQIILGVARGLQYLHEDSHVRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMVMDLIDPKLREKGYVEKDVMQAFHVAFLCLQPHPDLRPAMSQIVALLTFKIDMVTTPMRPAFLDRRRVMDDENHSWEVISEVLQTPVASDSML 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00683 422 SUPERFAMILY Protein kinase-like (PK-like) 87 379 IPR011009 -
Vivi1g00683 422 Gene3D Phosphorylase Kinase; domain 1 66 181 - -
Vivi1g00683 422 Pfam Protein tyrosine and serine/threonine kinase 108 375 IPR001245 GO:0004672|GO:0006468
Vivi1g00683 422 CDD STKc_IRAK 111 377 - -
Vivi1g00683 422 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 182 386 - -
Vivi1g00683 422 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g00683 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Vivi1g00683 422 SMART serkin_6 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00683 422 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 39 401 - -
Vivi1g00683 422 Gene3D Transferase(Phosphotransferase) domain 1 182 385 - -
Vivi1g00683 422 FunFam Cysteine-rich receptor-like protein kinase 10 69 181 - -
Vivi1g00683 422 ProSiteProfiles Protein kinase domain profile. 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00683 Vivi-Chr1 14778827 14781005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00683 12 392 Receptor kinase-like Gene Family AT1G56120 42.782 2.11e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g00683 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00683 - - ccaj:109792436 635.565