Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00681 ATGGAAGATTTCAGCGATGAAGAATGCAACACAGGTTTATATCTTGGATTAGGAATCAAAAAGGAGAAGAAGAAACCGAAATTGATGAATAAACCTTGTTTTGACCTAGCTTTTGAGCTTTGTCCTAAAAGTGAAGCCATCAAAGTTCACAATTCTCATAACAACAATAACAATAACAACAGTGAGAGATTCAGTTTGGAGTATTATCCCAATGCAACAACATGCAGCACCGATTCCGATAACAACAACAACAACACCGATCGGCGAAAGAAACTCCGGCTCACAAAGGAACAATCAGCCATGCTTGAAAACACCTTCAAGCTCCATAACACTCTTAATCCGGTGCAGAAGAAAACACTAGCTGACCAATTGAAATTAAAGACTAGACAAATTGAAGTTTGGTTTCAGAATAGGAGAGCGAGGACGAAGCTGAAGCAGACAGAGATAGATTATGAGTTGTTGAAGAAGCAATGTCAAAATCTAAGTGATGAGAATAAAAGATTGAAGAAAGAGTTACAAGAATTGAAAGTAAGACAATCTCCATTATGCCCTCAACGATTATCAAAACCTGTTTGTTCTTCCTGCGACCAGAAACTGTTGAAGCGCAATGAAGACAACAACAACAATTAA 630 0.3778 MEDFSDEECNTGLYLGLGIKKEKKKPKLMNKPCFDLAFELCPKSEAIKVHNSHNNNNNNNSERFSLEYYPNATTCSTDSDNNNNNTDRRKKLRLTKEQSAMLENTFKLHNTLNPVQKKTLADQLKLKTRQIEVWFQNRRARTKLKQTEIDYELLKKQCQNLSDENKRLKKELQELKVRQSPLCPQRLSKPVCSSCDQKLLKRNEDNNNN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00681 209 Coils Coil 137 178 - -
Vivi1g00681 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 198 - -
Vivi1g00681 209 CDD homeodomain 88 146 IPR001356 GO:0003677
Vivi1g00681 209 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Vivi1g00681 209 SUPERFAMILY Homeodomain-like 69 146 IPR009057 -
Vivi1g00681 209 Gene3D - 81 150 - -
Vivi1g00681 209 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Vivi1g00681 209 Pfam Homeobox associated leucine zipper 145 176 IPR003106 GO:0006355|GO:0043565
Vivi1g00681 209 SMART HOX_1 87 149 IPR001356 GO:0003677
Vivi1g00681 209 SMART halz 145 190 IPR003106 GO:0006355|GO:0043565
Vivi1g00681 209 Pfam Homeodomain 88 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00681 Vivi-Chr1 14726140 14727349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00681 73 177 Homeobox Transcription Factor Family AT4G37790 64.486 2.43e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g00681 Homeodomain 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00681 K09338 - gmx:100812222 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00681 1 14726140 14727349 Vivi4g02313 4 114773081 114775143 PCT