Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00673 ATGGGGAACTGTTGGAGTCTTCAATCCTCAGGCGATCCTCCCAGCTCCAATACTGCTCCTAACACAAACAATCAATCAGGAAGCATTCCATTGTCGACTGGTCTCAGCAACTTAAGATTGATAAAAAATGGCAACTCCTCTTCCCTTGGGCGTAGCAGCTACTCTGGAGGAAATAGCAGACTATTTAGTAGTAGTAGTAGTAGTAACAATAACATAAGTGGCAATAATACAAGTACATCCTTTCGGGGCTCTGAGAATAGCCAGATCTCTCGAGTAAGAGAAGACGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGATTTTACTCTGGCAGAACTGAAAGCAGCCACTAGAAATTTCCGTTCAGATAATATATTAGGAGAGGGTGGGTTTGGTATAGTATACAAGGGTTTGTTTAAGGAAAGAGCAACGTCAAAAAGAAATGAGGATTTGACTATTGCCGTAAAAAGATTGAATTCTCACAGCATTCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGCGAGTTATTTCTGGTGTATGAATTTTTGCACCGTGGCAGCTTGGACAACCACCTATTTGGAAGAGGTTCAAATGTTCGTCCACTTTCATGGGACAGAAGGCTGAAAATTATGATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCCTTGGAGAAGAAAATTATATACAGAGATCTCAAACCCTCAAATATACTACTTGACAAGGAATACACAGCCAAGTTGTCAGACTTTGGCTTGGCCAGATCTCTTCCTGATGATCACACTCATGTATCAACACGGGTTGTTGGAACATGTGGCTATGCTGCCCCGGAGTACATCACCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATATTAACCGGTAAGCGGATGGTCGAGATACTACGCTTTGGTGAGTCAAAATCCTTCGATGATTGGGTCAAATCAAATCTATTAAATAGAGCAAAATCGAGATGCAACATGGATGCAAAGTTGGAAGGCAAATATCCACCCAACTTAGCTTCAAAAGTAGCTCAACTTGCTCTCAAATGCATCCAGCCAGATCACAAAGTTAGGCCATCAATGAAGGAAGTCCTTGAAACATTGGAAAGTATTGAAGCAGCCAATGAGAAACCAGCTGATAATATAAAGAGGACTACTAACTCCACGGCAGTTCAGCTACATGGCCTGCTAGATGGTAGTTAA 1308 0.4197 MGNCWSLQSSGDPPSSNTAPNTNNQSGSIPLSTGLSNLRLIKNGNSSSLGRSSYSGGNSRLFSSSSSSNNNISGNNTSTSFRGSENSQISRVREDEEFPYGQILDAANLKDFTLAELKAATRNFRSDNILGEGGFGIVYKGLFKERATSKRNEDLTIAVKRLNSHSIQGFAEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSNVRPLSWDRRLKIMIGAARGLNFLHSLEKKIIYRDLKPSNILLDKEYTAKLSDFGLARSLPDDHTHVSTRVVGTCGYAAPEYITTGHLYVKSDVYGFGIVLLEILTGKRMVEILRFGESKSFDDWVKSNLLNRAKSRCNMDAKLEGKYPPNLASKVAQLALKCIQPDHKVRPSMKEVLETLESIEAANEKPADNIKRTTNSTAVQLHGLLDGS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00673 435 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 208 416 - -
Vivi1g00673 435 CDD STKc_IRAK 130 406 - -
Vivi1g00673 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vivi1g00673 435 Gene3D Transferase(Phosphotransferase) domain 1 208 428 - -
Vivi1g00673 435 SMART serkin_6 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00673 435 Gene3D Phosphorylase Kinase; domain 1 84 207 - -
Vivi1g00673 435 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g00673 435 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00673 435 SUPERFAMILY Protein kinase-like (PK-like) 102 403 IPR011009 -
Vivi1g00673 435 MobiDBLite consensus disorder prediction 59 87 - -
Vivi1g00673 435 PANTHER OS01G0588500 PROTEIN-RELATED 71 407 - -
Vivi1g00673 435 MobiDBLite consensus disorder prediction 59 92 - -
Vivi1g00673 435 ProSitePatterns Protein kinases ATP-binding region signature. 130 160 IPR017441 GO:0005524
Vivi1g00673 435 FunFam Serine/threonine-protein kinase BIK1 91 207 - -
Vivi1g00673 435 Pfam Protein tyrosine and serine/threonine kinase 127 403 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00673 Vivi-Chr1 14570654 14593458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00673 112 403 Glycoside Hydrolase AT3G07070 42.857 1.04e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g00673 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00673 - - gmx:100813304 600.512