Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00662 ATGGGAAACTGTTGGAGTCTTCAACCTTCGGGCGATCGTCCATACTCAAATACTGCAGCTGACACGAACAATCAATCAGGGAGGCCTCCATTTTCTTTTGGTCTCAGCAACTTAGGATTGTTAACAAATGGCAATTCCGCTTCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGCAGACTATTTAGTAGTAGTAATAATCACTCAACAGGAAATAATACAAGTACATCCCTTTGGGGCTCTGAGAATAGCAAGATCTCTCGAGTAAGAGAAGACGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGCAGAACTGAAAGCAGCCACTAGAAATTTTCGTCCAGACACTTTATTAGGAGAGGGTGGATTCGGTAGCGTATACAAGGGTTTGTTTAAGGAGAGAGCAACCTCAAAAAGAGACGAGAATTCGACTATTGCCATCAAGAAATTGAATTCTAACAGCACACAAGGATTTGTAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGCGAGTTATTTTTGGTGTATGAATTTTTGCACCGTGGCAGCTTGGACAACCACCTATTTGGAAGAGGTTCAAATGTTCATCCACTTTCATGGGACAGAAGGCTGAAAATTATGATTGGAGCAGCTAGGGGACTAAACTTCCTCCACTCCTTGGAGAAGAAAATTATATACAGAGATCTCAAACCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGCTGTCAGACTTTGGCTTGGCCAGATCTATTCCTTCTGATGATCGCACTCATGTATCAACACAGATTGTAGGAACACGTGGCTATGCCGCCCCGGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATACTAACCGGTAAGCGGATATGCGAGATACTACGCCTTAGCGAGCCAAAGTCCCTACGTGATTGGCTCAAATCAAACCTATTAAATAGAGCAAAATCAAGAAGCAACATGGATGCAAAGTTGGAAGGAAGATATCCACCGAACTTAGCTTCACAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAACCCAAAATTAGGCCATCAATGAAGGAAGTCCTTGAAACATTGGAAAGTATTGAAGCAGCCAATGAGAAACCAGCTGATAATATAAAGAGGACTACAAATTCCAAGGCAGTTCAGCTACATGGCCAACCAGATGGTGGTTAA 1302 0.4263 MGNCWSLQPSGDRPYSNTAADTNNQSGRPPFSFGLSNLGLLTNGNSASLGRSSNSGGNSRLFSSSNNHSTGNNTSTSLWGSENSKISRVREDEEFPYGQILDAANLKVFTLAELKAATRNFRPDTLLGEGGFGSVYKGLFKERATSKRDENSTIAIKKLNSNSTQGFVEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSNVHPLSWDRRLKIMIGAARGLNFLHSLEKKIIYRDLKPSNILLDKAYTAKLSDFGLARSIPSDDRTHVSTQIVGTRGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRICEILRLSEPKSLRDWLKSNLLNRAKSRSNMDAKLEGRYPPNLASQVAQLALKCIQTEPKIRPSMKEVLETLESIEAANEKPADNIKRTTNSKAVQLHGQPDGG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00662 433 ProSitePatterns Protein kinases ATP-binding region signature. 127 158 IPR017441 GO:0005524
Vivi1g00662 433 SMART serkin_6 121 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00662 433 Pfam Protein tyrosine and serine/threonine kinase 125 401 IPR001245 GO:0004672|GO:0006468
Vivi1g00662 433 ProSiteProfiles Protein kinase domain profile. 121 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00662 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vivi1g00662 433 PANTHER OS01G0588500 PROTEIN-RELATED 70 405 - -
Vivi1g00662 433 MobiDBLite consensus disorder prediction 409 433 - -
Vivi1g00662 433 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g00662 433 SUPERFAMILY Protein kinase-like (PK-like) 98 401 IPR011009 -
Vivi1g00662 433 CDD STKc_IRAK 127 404 - -
Vivi1g00662 433 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 205 414 - -
Vivi1g00662 433 Gene3D Phosphorylase Kinase; domain 1 105 204 - -
Vivi1g00662 433 Gene3D Transferase(Phosphotransferase) domain 1 205 427 - -
Vivi1g00662 433 FunFam Serine/threonine-protein kinase BIK1 88 204 - -
Vivi1g00662 433 MobiDBLite consensus disorder prediction 49 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00662 Vivi-Chr1 14486342 14490198 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00662 107 401 Glycoside Hydrolase AT3G07070 42.568 6.35e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g00662 PK_Tyr_Ser-Thr 9.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00662 - - gmx:100813304 607.831