Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00656 ATGGGAAACTGTTGGAGTCTTCAACCTTCGGGCGATCGTCCATACTCAAATACCGCAGCTGACACGAACAATCAATCAGGGAGGCCTCCATTTTCTTTTGGTCTCAGCAACTTAGGATTGTTAACAAATGGCAATTCCACCTCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGCAGACTATTTAGTAGTAATAATCACTCAACAGGAAATAATACAAGTACATCTCTTTGGGGCTCTGAGAATAGCAAGATCTCTCGAGTAAGAGAAGATGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGCAGAACTGAAAGCAGCTACTAGAAATTTTCGTCCAGATACTTTATTAGGAGAGGGTGGGTTCGGTAGCGTATACAAGGGTTTGTTTAAGGAGAGAGCAACCTCAAAAAGAGACGAGAATTCGACTATTGCCATCAAGAAATTGAATTCTAACAGCACGCAAGGATTTGTAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGGCGAGTTATTTCTGGTGTATGAATTTTTGCACCGTGGCAGCTTGGACAACCACCTATTTGGAAGAGGTTCAAATGTTCGTCCACTTTCATGGGACAGAAGACTGAAAATTATTATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCCTTGGAGAAGAAAATTATATACAGAGATCTCAAACCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGCTGTCAGACTTTGGCTTGGCCAGATCTATTCCTTCTGATGATCGCACTCATGTATCAACACAGATTGTAGGAACACGTGGCTATGCCGCCCCGGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATACTAACCGGTAAGCGGATAGGCGAGATAATACGCCTAAGCGAGCCAAAGTCCCTACGTGATTGGCTCAAATCAAACCTATTAAATAGAGCAAAATCAAGAAGCAACATGGATGCAAAGTTGGAAGGAAGATATCCACCGAACTTAGCTTCACAAGTAGCTCAACTTGCTCTCAAATGCATCCAAACAGAACCCAAAATTAGGCCATCAATGAAGGAAGTCCTTGAAACATTGGAAAGTATTGAAGCAGCCAATGAGAAACCAGCTGATAATATAAAGAGGACTACAAATTCCAAGGCAGTTCGGTCACATGGCCAACCAGATGGTGGTTAA 1299 0.4249 MGNCWSLQPSGDRPYSNTAADTNNQSGRPPFSFGLSNLGLLTNGNSTSLGRSSNSGGNSRLFSSNNHSTGNNTSTSLWGSENSKISRVREDEEFPYGQILDAANLKVFTLAELKAATRNFRPDTLLGEGGFGSVYKGLFKERATSKRDENSTIAIKKLNSNSTQGFVEWQSEVNFLGRLSHPNLVKLLGFGREDGELFLVYEFLHRGSLDNHLFGRGSNVRPLSWDRRLKIIIGAARGLNFLHSLEKKIIYRDLKPSNILLDKAYTAKLSDFGLARSIPSDDRTHVSTQIVGTRGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRIGEIIRLSEPKSLRDWLKSNLLNRAKSRSNMDAKLEGRYPPNLASQVAQLALKCIQTEPKIRPSMKEVLETLESIEAANEKPADNIKRTTNSKAVRSHGQPDGG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00656 432 ProSiteProfiles Protein kinase domain profile. 120 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00656 432 Gene3D Phosphorylase Kinase; domain 1 104 203 - -
Vivi1g00656 432 CDD STKc_IRAK 126 403 - -
Vivi1g00656 432 MobiDBLite consensus disorder prediction 407 432 - -
Vivi1g00656 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vivi1g00656 432 SMART serkin_6 120 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00656 432 PANTHER OS01G0588500 PROTEIN-RELATED 69 404 - -
Vivi1g00656 432 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 204 413 - -
Vivi1g00656 432 MobiDBLite consensus disorder prediction 1 29 - -
Vivi1g00656 432 SUPERFAMILY Protein kinase-like (PK-like) 97 400 IPR011009 -
Vivi1g00656 432 ProSitePatterns Protein kinases ATP-binding region signature. 126 157 IPR017441 GO:0005524
Vivi1g00656 432 FunFam Serine/threonine-protein kinase BIK1 87 203 - -
Vivi1g00656 432 Pfam Protein tyrosine and serine/threonine kinase 124 400 IPR001245 GO:0004672|GO:0006468
Vivi1g00656 432 Gene3D Transferase(Phosphotransferase) domain 1 204 426 - -
Vivi1g00656 432 MobiDBLite consensus disorder prediction 46 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00656 Vivi-Chr1 14337159 14341132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00656 106 400 Glycoside Hydrolase AT3G07070 42.568 1.06e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g00656 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00656 - - gmx:100813304 609.757