Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00654 ATGCATGCACTTCATGGCCAACCCAAGACCCTAATGGCGTGTCCTCTTTTTCTTCGTTCTCTCTGGTCTTCCACCAGAAAATCATTTGCCACTTCATCACCCTCTCGTTACTTCTCCCGCGCCGCTACCGCCGCCGCCTCCTCTTCCGATCCCACCGGATCCCTCGACCCTGCCCGCCTTCGCAACGTCGCCGTCATAGCTCATGTCGACCACGGTAAGACAACTCTCATGGACCGTCTGCTCCGCCAGTGCGGCGCTGATATCCCGCACGAGCGCGCCATGGACTCCATTTCTCTCGAACGCGAGCGCGGCATCACTATCTCTTCCAAGGTTACTTCTATTGCATGGAAAGAAAATGAACTCAACATGGTGGATACTCCTGGACATGCTGATTTTGGCGGCGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCCGGGGAAGGTCCACTAGCTCAAACTAAGTTTGTTCTTGCAAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGACCGGCCTGCTGTTACTGAGGAGATATGCAATGAGGTTGAGAGTCTGGTGTTTGATCTATTTGCGAACCTGGGCGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCGGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATCGTAACACATGTTCCTCCACCAAATGCAAACATTAATGCACCTTTCCAAATGCTGGTTTCGATGATGGAGAAGGACCTTTATCTTGGGCGGATTTTAACTGGACGTGTGTATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGTGCTGAAAAGTTTGAAGAAGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAATCATGGTTGTAACTGATTGTGCTGGAGCTGGTGACATAATTTCAATTGCTGGTTTGGCAAGTCCATCTATCGGACATACAGTCACTACTGTGGAGATTATGTCTGCATTGCCCACGGTTGAATTGGATCCACCAACAATTTCTATGACCTTTGGTGTAAACGACTCCCCATTAGCTGGTCATGATGGTACTCATTTGACTGGGGGAAAAATTGGTGATCGACTAACGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCATGCTTGTCAGAAATGTTTGAAGTTCAAGGAAGAGGAGAACTGCAGCTGGGTATTTTGATTGAGAATATGAGGCGCGAGGGATTTGAACTATCTGTCTCTCCACCTAAAGTCATGTATAAAACCGAAAAAGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGGGCACGTTGGCTTTGTAATGGAGACTTTGTCTCATAGACGAGCTGAGGTTACCGACATGGGTCCTGTCGCCGGAGCTATTGGTCGAACTAAATTGTCCTTGACTTGTCCATCAAGGGGCTTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACAAGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGTAATGTGAGGAAAGGAGTATTGGTGTCAGTGGGTAAAGGTCCAATCACATCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTTTTTTTGTATCTCCTGGAATTGAGACATATGATGGTATGATTGTTGGAGAACACTCACGGGATACAGATCTTGATGTTAATCCAATGGCGACTAAACCACTTACAAATATACGCGCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTCATGACACTTGAAGAAGCCATAGGATATGTAGCTTCAGATGAGCTTATCGAGGTATGTTCCAATCTAGAATTTAAAAAATGCTGTAGAAAGTTTTATCTGATTTTTGCAGTGAAAATATGTAAGGGTGCTTCTTCCTCAACGCACCTCCATTCTATGTCCAGTACCCACTAA 2043 0.4626 MHALHGQPKTLMACPLFLRSLWSSTRKSFATSSPSRYFSRAATAAASSSDPTGSLDPARLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITISSKVTSIAWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEICNEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVTHVPPPNANINAPFQMLVSMMEKDLYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKFEEGKVVKLMKKKGTIMVVTDCAGAGDIISIAGLASPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGHDGTHLTGGKIGDRLTAEAETNLAINVLPCLSEMFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEVNDGHVGFVMETLSHRRAEVTDMGPVAGAIGRTKLSLTCPSRGLVGYRSVFSSETSGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGKGPITSHALMSLEARGTFFVSPGIETYDGMIVGEHSRDTDLDVNPMATKPLTNIRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVCSNLEFKKCCRKFYLIFAVKICKGASSSTHLHSMSSTH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00654 680 FunFam Elongation factor family protein 257 361 - -
Vivi1g00654 680 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 57 230 - -
Vivi1g00654 680 CDD BipA_III 367 444 IPR047043 -
Vivi1g00654 680 Pfam Elongation factor G C-terminus 457 540 IPR000640 -
Vivi1g00654 680 Pfam Elongation factor Tu GTP binding domain 59 253 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 PRINTS GTP-binding elongation factor signature 62 75 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 PRINTS GTP-binding elongation factor signature 122 132 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 PRINTS GTP-binding elongation factor signature 138 149 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 PRINTS GTP-binding elongation factor signature 174 183 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 CDD BipA_TypA_II 263 360 IPR047042 -
Vivi1g00654 680 FunFam GTP-binding protein TypA 545 631 - -
Vivi1g00654 680 NCBIfam small GTP-binding protein domain 61 191 IPR005225 GO:0005525
Vivi1g00654 680 Gene3D bipa protein 545 625 IPR042116 -
Vivi1g00654 680 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 95 110 IPR031157 -
Vivi1g00654 680 SUPERFAMILY EF-G C-terminal domain-like 365 448 IPR035647 -
Vivi1g00654 680 FunFam GTP-binding protein TypA 450 544 - -
Vivi1g00654 680 Gene3D Translation factors 257 361 - -
Vivi1g00654 680 Gene3D - 58 256 IPR027417 -
Vivi1g00654 680 Pfam Elongation factor Tu domain 2 277 351 IPR004161 GO:0005525
Vivi1g00654 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 265 IPR027417 -
Vivi1g00654 680 Gene3D Elongation Factor G (Translational Gtpase), domain 3 368 643 - -
Vivi1g00654 680 FunFam GTP-binding protein TypA 368 472 - -
Vivi1g00654 680 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 58 256 IPR000795 GO:0003924|GO:0005525
Vivi1g00654 680 FunFam GTP-binding protein TypA 59 256 - -
Vivi1g00654 680 SUPERFAMILY Translation proteins 205 360 IPR009000 -
Vivi1g00654 680 Gene3D - 450 544 - -
Vivi1g00654 680 SUPERFAMILY EF-G C-terminal domain-like 459 575 IPR035647 -
Vivi1g00654 680 NCBIfam translational GTPase TypA/BipA 60 644 IPR006298 GO:0003924|GO:0005525
Vivi1g00654 680 CDD BipA_TypA_C 459 539 IPR035651 -
Vivi1g00654 680 CDD TypA_BipA 60 255 IPR047041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00654 Vivi-Chr1 14306825 14323216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00654 59 183 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 3.94e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00654 K06207 - gmx:100782425 1069.3