Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00652 ATGGTTGTAGATCCGGTTATGGTTCCCAAGATGAGAATGGATAAACAGTTTGCTATTCAAGAAGCTGCTTCTGCTGGATTGAAAAGCATGGAGCATCTCATTCGTGTGCTTTCTTCTCAAGCTTCGTCTTCTTCCTCCATCAATCAAAGTAACCGTTTAGATCTTGATTGCACAGAAATAACTGATTTCACTGTTTCTAAGTTTAAACAGGTTATTAATTTGTTGAATCGTACCGGTCACGCTCGTTTTCGTCGTGCACCTTCTTCACAATCTCAACCGATATCTGAGAAAATGAATCTTCATCATCATCAACAACCACAGTCAACTACTCTTGATTTCGCAAAACCGATTCAAGTAGTTAATCCAAATCCAAATCTGAATCTGAAATCTAAACCTAAACCTAATCCATCTACGGATTTAACTGTTTCTCAATACTCTAAATCGAAAGAAGCATACAGTATCTCAACCACTACTTCTTCTCTTCATTCCACTATCACCGTCACCGGAGACGGAAGCGTTTCCGACGGCAAAATAGGTCCTATCATCTCATCTGGAAAGCCTCCTCTTGCTTCATCTCATCGGAAAAGGTGTCATGAAGCAACTGTCTCCGGTGCCGCTTCCGGTAAAGTATCTTCGTCCGGTCACTGCCATTGCTCTAAGAGAAGGAAATCTCGTGTGAAGAGAACAATTCGTGTTCCGGCGATAAGTACGAAGGTTGCTGATATTCCGGCAGACGAATTTTCATGGAGGAAATACGGTCAAAAACCGATCAAAGGTTCACCTTACCCACGTGGTTACTACAAGTGCAGTAGCTTTAAAGGTTGTCCGGCGAGAAAGCATGTGGAAAGGGCACAAGATGATCCCAATATGCTTCTTGTGACCTACGAGGAGGAGCACCAACACTTGCCAACCTTCGGAACCGGAACCGGTGCCGGTGCCGGATTTACATCTCAGGCTCACTAA 963 0.4361 MVVDPVMVPKMRMDKQFAIQEAASAGLKSMEHLIRVLSSQASSSSSINQSNRLDLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSSQSQPISEKMNLHHHQQPQSTTLDFAKPIQVVNPNPNLNLKSKPKPNPSTDLTVSQYSKSKEAYSISTTTSSLHSTITVTGDGSVSDGKIGPIISSGKPPLASSHRKRCHEATVSGAASGKVSSSGHCHCSKRRKSRVKRTIRVPAISTKVADIPADEFSWRKYGQKPIKGSPYPRGYYKCSSFKGCPARKHVERAQDDPNMLLVTYEEEHQHLPTFGTGTGAGAGFTSQAH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00652 320 Gene3D WRKY domain 216 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00652 320 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00652 320 MobiDBLite consensus disorder prediction 124 144 - -
Vivi1g00652 320 SUPERFAMILY WRKY DNA-binding domain 240 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1g00652 320 MobiDBLite consensus disorder prediction 83 108 - -
Vivi1g00652 320 FunFam WRKY transcription factor 65 227 304 - -
Vivi1g00652 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 303 IPR044810 GO:0003700
Vivi1g00652 320 SMART WRKY_cls 243 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1g00652 320 Pfam Plant zinc cluster domain 194 241 IPR018872 -
Vivi1g00652 320 ProSiteProfiles WRKY domain profile. 238 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00652 Vivi-Chr1 14080140 14081691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00652 1 301 WRKY Transcription Factor Family AT2G24570 51.923 1.93e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1g00652 WRKY 8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00652 - - gmx:732587 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00652 1 14080140 14081691 Vivi1g00652 1 14080140 14081691 ECH
Vivi2g03373 2 138715032 138716508 Vivi1g00652 1 14080140 14081691 PCT