Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00648 ATGACAGGGCTGGTTGTGGCTGCAGCAGCTTATGCAGGTAGATATGTTATCCAGGCCTGGCAAGCATTCAAGGCTAGACCGGCTGGGATGTGTAAATTTTATGAAGGTGGTTTTCATGCTACCATGAATAAGAGGGAAGCATCTCTCATCCTTGGTGTTAGCTGTAGGCACTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGAGCTGCAACCTTGCCAACACACAATTCTCCACTAAACAAGAATGAGAGTCAAAATTTGGAGAACAATCAGATAGTGCTTAGAGATGCTGCTGAATCATCATGA 393 0.4707 MTGLVVAAAAYAGRYVIQAWQAFKARPAGMCKFYEGGFHATMNKREASLILGVSCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRAATLPTHNSPLNKNESQNLENNQIVLRDAAESS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00648 130 Pfam GATA zinc finger 55 90 IPR000679 GO:0006355|GO:0043565
Vivi1g00648 130 ProSitePatterns GATA-type zinc finger domain. 55 82 IPR000679 GO:0006355|GO:0043565
Vivi1g00648 130 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 52 112 - -
Vivi1g00648 130 Gene3D - 52 99 IPR013088 GO:0006355|GO:0008270
Vivi1g00648 130 CDD ZnF_GATA 54 96 IPR000679 GO:0006355|GO:0043565
Vivi1g00648 130 SMART GATA_3 49 102 IPR000679 GO:0006355|GO:0043565
Vivi1g00648 130 PANTHER GATA TRANSCRIPTION FACTOR 28 54 118 IPR045280 GO:0006355
Vivi1g00648 130 ProSiteProfiles GATA-type zinc finger domain profile. 52 97 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00648 Vivi-Chr1 13923895 13926849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00648 53 123 Tify Gene Family AT1G51600 70.423 8.24e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g00648 GATA 8.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00648 - - vvo:131629114 233.032