Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00647 ATGACAGGGCTGGTTGTGGCTGCAGCAGCTTATGCAGGTAGATATGTTATCCAGGCCTGGCAAGCATTCAAGGCTAGACCGGCTGGGATGTGTAAATTTTATGAAGGTGGTTTTCATGCTACCATGAATAAGAGGGAAGCATCTCTCATCCTTGGTGTTAGCTGTAGGCACTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGAGCTGCAACCTTGCCAACACACAATTCTCCACTAAACAAGAATGAGGCTCTGAGTGAGAAAGGCTATGAACTTGTTTCCGGTGGGACTGAAAATCATCTAGTTTTGGTGAATATGAAGAAAAAGGTAACCCGATAA 426 0.4695 MTGLVVAAAAYAGRYVIQAWQAFKARPAGMCKFYEGGFHATMNKREASLILGVSCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGALRDLSRAATLPTHNSPLNKNEALSEKGYELVSGGTENHLVLVNMKKKVTR 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00647 141 ProSitePatterns GATA-type zinc finger domain. 55 82 IPR000679 GO:0006355|GO:0043565
Vivi1g00647 141 PANTHER GATA TRANSCRIPTION FACTOR 28 54 112 IPR045280 GO:0006355
Vivi1g00647 141 CDD ZnF_GATA 54 96 IPR000679 GO:0006355|GO:0043565
Vivi1g00647 141 Gene3D - 52 99 IPR013088 GO:0006355|GO:0008270
Vivi1g00647 141 Pfam GATA zinc finger 55 90 IPR000679 GO:0006355|GO:0043565
Vivi1g00647 141 SMART GATA_3 49 102 IPR000679 GO:0006355|GO:0043565
Vivi1g00647 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 52 107 - -
Vivi1g00647 141 Pfam Serine hydroxymethyltransferase 111 138 IPR039429 -
Vivi1g00647 141 Gene3D Aspartate Aminotransferase, domain 1 110 141 IPR015422 GO:0003824
Vivi1g00647 141 ProSiteProfiles GATA-type zinc finger domain profile. 52 97 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00647 Vivi-Chr1 13923892 13928730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00647 53 112 Tify Gene Family AT1G51600 78.333 4.75e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi1g00647 SHMT 1.1e-06 CL0061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00647 - - vvo:131629114 286.96