Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00644 ATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTGTTTTAATGGTCGCTGCGGTGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGCGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTTCTGTTACAGCGATAACCGATTACAAACAATCTCTTCAGTTTCATGACTTAAATGAGCATAAAAGAAACATACATTTGCAGGTTATTAGAGATGGAAGAAGAATCGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCACTCAATATCGGTAACCAGGTTCCTGCCGACGGAATTTTGATCACCGGTCACTCTCTTGCAGTTGATGAATCAAGTATGACCGGGGAGAGCAAGATCGTCAATAAGCATTCTAAGGAACCTTTTTTGATGTCGGGATGTAAAGTTGCAGACGGAAGCGGCACTATGCTAGTAACCGCTGTCGGTATTAATACCGAATGGGGGCTTCTAATGACTAGCATTTCAGAAGACACTAGTGAAGAAACACCTTTGCAGGTTCGCTTGAATGGTCTCGCTACCTTCATCGGTATCGCTGGCCTCGCTGTGGCTATAATTGTTCTAGTTGTGTTACTCGCCAGATATTTCTCCGGGCACACTAAAAATCCCGATGGAAGTGTTCAATTTATAGCGGGAAAGACCTCGGTCGGGGATGCTATTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTACCCGAAGGACTTCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGATCAGCCACAACTATTTGCAGTGATAAGACTGGAACATTGACAATGAATCAGATGAGTGTTGTTGAGGCATGTGTTAGTGGGAAGAAGATTATACCTCCTAACGATAAGTCGCAGCTATCTCCTATCCTCTATTCTTTGCTGATTGAAGGTGCTGCACAGAACACTAATGGAAGTGTTTTTGTACCTGAGAGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTACCAGATCAGAATCATCAATCGTACATGTTTTTCCATTCAACTCGGACAAGAAAAGAGGCGGAGTAGCATTACAAATGGTAATACCTTCTTTGCAGCCCGACGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTTGCCAGCTGTACTCGGTATTTTGATATAAATGATCAGTTGGTGGATATGGATGAAGAAAAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCCAATAGTCTACGTTGTGTTGCCATTGCATATAGACTATTAGATAAAACGGAGAACATTCCAACCGGCGAAGAAGAACTTGCTTGCTGGTCATTACCAGAGGACGATCTTGTTTTACTGGCTATTGTCGGTCTGAAGGTATGTATTTCCTCCAGAATTAATACTATAATGTCATCTTTGTCTTTTTTAGAATCCATAACCATTCTTGAAGGATCCATTCCTTGTAAATTATGTATCGAAATGCAGGATCCTTGTCGACCTGGCGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTGGCGGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGAGCCTTGTCAGACAAAGAGAGAGAAGACATTGTTGAAAAGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCCGTAACCGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTTAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAATGTCATTGCTTCATTTTCCACTGGCGATGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTAGGAGCACTAGCCTTGGCAACTGAATCACCAACAGATCACCTTATGGATCAGCTTCCAGTTGGTAGAAGAGATCCTCTTGTAACAAATATTATGTGGAGGAATCTGCTAATACAGGCTATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAGCATACTGAGTCTAAGGCACGAGATCAACGCCTATGCTGTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTATGTCAAGTATTTAATGAATTTAACGCGCGAAAGCCAGATGAATTCAACATTTTCAAGGGGGTTACCAAAAACTATCTATTTATGGGGATAGTGGGATTAACTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATATGTGTTTTTATAGGATTTATCAGCTGGCCTCTTGCAGTGATTGGAAAACTGATACCAGTACCTACGACTCCCATGAATAACTGTTTTAGAAGATTTCAATGTGGAAGAACTAGAAGAAAGATGGATTCTTAA 2808 0.4092 MFIWDACKDLTLIVLMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVISVTAITDYKQSLQFHDLNEHKRNIHLQVIRDGRRIEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAVDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMTSISEDTSEETPLQVRLNGLATFIGIAGLAVAIIVLVVLLARYFSGHTKNPDGSVQFIAGKTSVGDAINGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMSVVEACVSGKKIIPPNDKSQLSPILYSLLIEGAAQNTNGSVFVPESGNGVEVSGSPTEKAILHWGFQLGMDFEATRSESSIVHVFPFNSDKKRGGVALQMVIPSLQPDAEIHIHWKGAAEIVLASCTRYFDINDQLVDMDEEKMTVLRNVIEDMAANSLRCVAIAYRLLDKTENIPTGEEELACWSLPEDDLVLLAIVGLKVCISSRINTIMSSLSFLESITILEGSIPCKLCIEMQDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSLADATEPNIIEGKTFRALSDKEREDIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTINIAALVINVIASFSTGDVPLNTVQLLWVNLIMDTLGALALATESPTDHLMDQLPVGRRDPLVTNIMWRNLLIQAMYQVSVLLILNFQGRSILSLRHEINAYAVKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTIVIQIVIIEFLGNFTKTVKLNWKQWLICVFIGFISWPLAVIGKLIPVPTTPMNNCFRRFQCGRTRRKMDS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00644 935 ProSitePatterns E1-E2 ATPases phosphorylation site. 299 305 IPR018303 -
Vivi1g00644 935 FunFam Calcium-transporting ATPase 665 914 - -
Vivi1g00644 935 Gene3D - 51 148 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 541 552 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 672 684 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 297 311 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 121 135 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 563 573 - -
Vivi1g00644 935 PRINTS P-type cation-transporting ATPase superfamily signature 648 667 - -
Vivi1g00644 935 FunFam Calcium-transporting ATPase 9 plasma membrane-type 151 321 - -
Vivi1g00644 935 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 912 IPR023298 -
Vivi1g00644 935 Pfam Cation transporting ATPase, C-terminus 733 910 IPR006068 -
Vivi1g00644 935 SUPERFAMILY Calcium ATPase, transduction domain A 75 170 IPR008250 -
Vivi1g00644 935 FunFam Calcium-transporting ATPase 307 511 - -
Vivi1g00644 935 SFLD p-type atpase 279 700 IPR044492 -
Vivi1g00644 935 Gene3D - 694 902 - -
Vivi1g00644 935 FunFam Calcium-transporting ATPase 51 173 - -
Vivi1g00644 935 FunFam Calcium-transporting ATPase 5 62 - -
Vivi1g00644 935 Gene3D - 549 693 IPR023214 -
Vivi1g00644 935 Gene3D - 350 510 IPR023299 GO:0000166
Vivi1g00644 935 SUPERFAMILY HAD-like 295 753 IPR036412 -
Vivi1g00644 935 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 303 509 IPR023299 GO:0000166
Vivi1g00644 935 Pfam haloacid dehalogenase-like hydrolase 294 662 - -
Vivi1g00644 935 SFLD Haloacid Dehalogenase 279 700 - -
Vivi1g00644 935 Gene3D - 149 319 - -
Vivi1g00644 935 PANTHER CATION TRANSPORTING ATPASE 2 912 - -
Vivi1g00644 935 Pfam E1-E2 ATPase 75 275 - -
Vivi1g00644 935 NCBIfam HAD-IC family P-type ATPase 615 728 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00644 935 NCBIfam HAD-IC family P-type ATPase 233 320 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00644 935 FunFam Calcium-transporting ATPase 542 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00644 Vivi-Chr1 13892400 13898399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00644 2 922 Primary Pumps ATPases AT5G57110 71.584 0.0 1332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00644 K01537 - gmx:100792945 1417.14