Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00642 ATGACTTCGTCAAAGGATTCTCCTCCGGCACATCGTGACTTAGAGTCCGGTTCTCTCAATGCTATTACCTGTTCTGCTGATGTGGATGGCGAAGATTACTCAACGGATCCATTTGATATTAGCCGAACAAAGGATGCTTCCATCCAACGACTCAAGCGTTGGAGGCAAGCTGCACTCGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAGGAGAGGAAGCAAATACTGAGGAAGATTATAGTTCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGCGAAGAACACAAACATACTTCCTTCAAGCTCCAATGGAGAATTTTCAATAGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATACAAATGCTCTAAAGGATTATGGAGGGGTTATAGGGTTGTCAAATTTGTTGAAAACCAATTTAGATAAGGGGACTAAAGGCGATGAAGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGAAAGGACAAAACTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTGTTTTAATGGTCGCTGCGGTGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGCGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTTCTGTTACAGCGATAACCGATTACAAACAATCTCTTCAGTTTCATGACTTAAATGAGCATAAAAGAAACATACATTTGCAGGTTATTAGAGATGGAAGAAGAATCGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCACTCAATATCGGTAACCAGGTTCCTGCCGACGGAATTTTGATCACCGGTCACTCTCTTGCAGTTGATGAATCAAGTATGACCGGGGAGAGCAAGATCGTCAATAAGCATTCTAAGGAACCTTTTTTGATGTCGGGATGTAAAGTTGCAGACGGAAGCGGCACTATGCTAGTAACCGCTGTCGGTATTAATACCGAATGGGGGCTTCTAATGACTAGCATTTCAGAAGACACTAGTGAAGAAACACCTTTGCAGGTTCGCTTGAATGGTCTCGCTACCTTCATCGGTATCGCTGGCCTCGCTGTGGCTATAATTGTTCTAGTTGTGTTACTCGCCAGATATTTCTCCGGGCACACTAAAAATCCCGATGGAAGTGTTCAATTTATAGCGGGAAAGACCTCGGTCGGGGATGCTATTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTACCCGAAGGACTTCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGATCAGCCACAACTATTTGCAGTGATAAGACTGGAACATTGACAATGAATCAGATGAGTGTTGTTGAGGCATGTGTTAGTGGGAAGAAGATTATACCTCCTAACGATAAGTCGCAGCTATCTCCTATCCTCTATTCTTTGCTGATTGAAGGTGCTGCACAGAACACTAATGGAAGTGTTTTTGTACCTGAGAGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTACCAGATCAGAATCATCAATCGTACATGTTTTTCCATTCAACTCGGACAAGAAAAGAGGCGGAGTAGCATTACAAATGGTAATACCTTCTTTGCAGCCCGACGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTTGCCAGCTGTACTCGGTATTTTGATATAAATGATCAGTTGGTGGATATGGATGAAGAAAAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCCAATAGTCTACGTTGTGTTGCCATTGCATATAGACTATTAGATAAAACGGAGAACATTCCAACCGGCGAAGAAGAACTTGCTTGCTGGTCATTACCAGAGGACGATCTTGTTTTACTGGCTATTGTCGGTCTGAAGGTATGTATTTCCTCCAGAATTAATACTATAATGTCATCTTTGTCTTTTTTAGAATCCATAACCATTCTTGAAGGATCCATTCCTTGTAAATTATGTATCGAAATGCAGGATCCTTGTCGACCTGGCGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTGGCGGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGAGCCTTGTCAGACAAAGAGAGAGAAGACATTGTTGAAAAGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCCGTAACCGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTTAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAATGTCATTGCTTCATTTTCCACTGGCGATGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTAGGAGCACTAGCCTTGGCAACTGAATCACCAACAGATCACCTTATGGATCAGCTTCCAGTTGGTAGAAGAGATCCTCTTGTAACAAATATTATGTGGAGGAATCTGCTAATACAGGCTATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAGCATACTGAGTCTAAGGCACGAGATCAACGCCTATGCTGTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTATGTCAAGTATTTAATGAATTTAACGCGCGAAAGCCAGATGAATTCAACATTTTCAAGGGGGTTACCAAAAACTATCTATTTATGGGGATAGTGGGATTAACTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATATGTGTTTTTATAGGATTTATCAGCTGGCCTCTTGCAGTGATTGGAAAACTGATACCAGTACCTACGACTCCCATGAATAACTGTTTTAGAAGATTTCAATGTGGAAGAACTAGAAGAAAGATGGATTCTTAA 3363 0.4115 MTSSKDSPPAHRDLESGSLNAITCSADVDGEDYSTDPFDISRTKDASIQRLKRWRQAALVLNASRRFRYTLDLKKEEERKQILRKIIVHIRAIQAAYRFKEAAKNTNILPSSSNGEFSIGQEQLSSISREHDTNALKDYGGVIGLSNLLKTNLDKGTKGDEADLVIRRNAFGSNNYPRKKGQNFLMFIWDACKDLTLIVLMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVISVTAITDYKQSLQFHDLNEHKRNIHLQVIRDGRRIEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAVDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMTSISEDTSEETPLQVRLNGLATFIGIAGLAVAIIVLVVLLARYFSGHTKNPDGSVQFIAGKTSVGDAINGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMSVVEACVSGKKIIPPNDKSQLSPILYSLLIEGAAQNTNGSVFVPESGNGVEVSGSPTEKAILHWGFQLGMDFEATRSESSIVHVFPFNSDKKRGGVALQMVIPSLQPDAEIHIHWKGAAEIVLASCTRYFDINDQLVDMDEEKMTVLRNVIEDMAANSLRCVAIAYRLLDKTENIPTGEEELACWSLPEDDLVLLAIVGLKVCISSRINTIMSSLSFLESITILEGSIPCKLCIEMQDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSLADATEPNIIEGKTFRALSDKEREDIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTINIAALVINVIASFSTGDVPLNTVQLLWVNLIMDTLGALALATESPTDHLMDQLPVGRRDPLVTNIMWRNLLIQAMYQVSVLLILNFQGRSILSLRHEINAYAVKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTIVIQIVIIEFLGNFTKTVKLNWKQWLICVFIGFISWPLAVIGKLIPVPTTPMNNCFRRFQCGRTRRKMDS 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00642 1120 Gene3D - 535 695 IPR023299 GO:0000166
Vivi1g00642 1120 Gene3D - 46 102 - -
Vivi1g00642 1120 PRINTS P-type cation-transporting ATPase superfamily signature 857 869 - -
Vivi1g00642 1120 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Vivi1g00642 1120 PRINTS P-type cation-transporting ATPase superfamily signature 833 852 - -
Vivi1g00642 1120 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Vivi1g00642 1120 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Vivi1g00642 1120 SUPERFAMILY HAD-like 480 938 IPR036412 -
Vivi1g00642 1120 Pfam haloacid dehalogenase-like hydrolase 479 847 - -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 9 plasma membrane-type 336 506 - -
Vivi1g00642 1120 Pfam Cation transporting ATPase, C-terminus 918 1095 IPR006068 -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 236 358 - -
Vivi1g00642 1120 SFLD C1.7: P-type atpase like 464 885 - -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 850 1099 - -
Vivi1g00642 1120 PANTHER CATION TRANSPORTING ATPASE 107 1097 - -
Vivi1g00642 1120 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1097 IPR023298 -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 190 247 - -
Vivi1g00642 1120 SMART Cation_ATPase_N_a_2 141 212 IPR004014 -
Vivi1g00642 1120 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 728 878 - -
Vivi1g00642 1120 Pfam Cation transporter/ATPase, N-terminus 141 207 IPR004014 -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 492 696 - -
Vivi1g00642 1120 Pfam E1-E2 ATPase 260 460 - -
Vivi1g00642 1120 FunFam Calcium-transporting ATPase 46 102 - -
Vivi1g00642 1120 CDD P-type_ATPase_Ca_PMCA-like 167 966 - -
Vivi1g00642 1120 NCBIfam HAD-IC family P-type ATPase 419 505 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00642 1120 NCBIfam HAD-IC family P-type ATPase 800 913 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00642 1120 SUPERFAMILY Calcium ATPase, transduction domain A 260 355 IPR008250 -
Vivi1g00642 1120 Gene3D - 230 333 - -
Vivi1g00642 1120 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 694 IPR023299 GO:0000166
Vivi1g00642 1120 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Vivi1g00642 1120 Gene3D - 734 878 IPR023214 -
Vivi1g00642 1120 SFLD p-type atpase 464 885 IPR044492 -
Vivi1g00642 1120 Gene3D - 334 504 - -
Vivi1g00642 1120 Gene3D - 879 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00642 Vivi-Chr1 13889016 13898399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00642 16 1116 Primary Pumps ATPases AT4G29900 67.206 0.0 1499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00642 K01537 - gmx:100790157 1647.87