Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00619 ATGCGTCCACCCGTAAAGAGAGTAGATTATAAAGTAGGAGACAAAGTAGAGGTATGTAGCACAGAAGAGGGATTTAGGGGTTCATATTACGAAGCCACAATTATTTTCTGCCTTGAGAGTGGGAAATATGTGGTTCGTTATAAGAACCTTCTTGAAGATGATGAATCTGGACCTCTCAAAGAGACACTTTTTCCGAAGGATCTTCGTCCCTCACCACCACGTGTTCGAAGTCCTCGCAAATTTCAACTCCGTCAGAAAGTTGATGTTTTTTATAACGATGGATGGTGGTTAGGGAAAATCGTTAGTGATAAGGTCCTTACACAAAAGGGTTATTACTATAAGGTGTATGTTGACAATATGCGTGAAGCAATTTACTACTCTTGTAAACGGATTCGTGTGCATCATGAGTTGATTCATGGAGATTGGATCTTGGAAGCATAA 441 0.4014 MRPPVKRVDYKVGDKVEVCSTEEGFRGSYYEATIIFCLESGKYVVRYKNLLEDDESGPLKETLFPKDLRPSPPRVRSPRKFQLRQKVDVFYNDGWWLGKIVSDKVLTQKGYYYKVYVDNMREAIYYSCKRIRVHHELIHGDWILEA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00619 146 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Vivi1g00619 146 Gene3D - 1 81 - -
Vivi1g00619 146 Pfam Agenet domain 13 73 IPR008395 -
Vivi1g00619 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 143 - -
Vivi1g00619 146 SMART agenet_At_2 79 139 IPR014002 -
Vivi1g00619 146 SMART agenet_At_2 8 76 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00619 Vivi-Chr1 13519616 13520056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00619 20 98 PHD Transcription Factor Family AT5G58610 33.673 5.27e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00619 - - cam:101489110 195.282