Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00618 ATGTCTTCTTGTTTGAGTGGAACCGGAGCAAGAACTTACGGGTTAGATTTAGATTTAATTAAATCACCACCATGTTCATGGAGTCGAACATCTCAAACATCTTCTTCTCCCTCTTCAACAATCTCCGAATCAAGCAATTCGCCACTCGCCATCTACACCACAAAACCTAGAAACCCTCGAAAACGACCCAACCAAACCTACAACGAAGCAGCAACACTCCTCTCAACCGCTTACCCGAACCTCTTCTCCAATCCGAACCTAAAAACAAACCCAAACAATAAATTCCACAAACCGTTATTATCGTCTGAGAAAAGTTATGAATCCGATTCTTCGGAACTTCTATTACCTTTCCGAGTATTCGACACGTCTTCGTCTTTTCTACTTCACAGTGCAATTCATCAAAGCAAAGTGAATTTGAATTTCCCGTCGGAGCCGAAGCCGGTGAAACCATGCCAGAGTCCCGGGGAGATAAGTTCCATGGTGAATTTACTCGAATTGAACGACGACGGAGATGATTTCGATGCGGAATCGATTCTCGATGAGGAAATTGAAGAAAGCATCGATAGTATCATGGGAGGGAGAATTCAGGAGGATGAATCTAAGGTAGCATCTTCTCATCATCTTCCATGGATTGGTTTAGGCGGGAAAATCGACTTCCGGTTAGGTTTACAGAGAGCCGGAGTGAGAGCTCTTCGTCATGTCGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCCAAAATTTGCAGTGTCGGTGGTAAAACGCCGGCGCCGGTGACGGAGAAGAAAAAGAAGAAGAAAGTGGTTGTGGTTATGAAACAGAGTGAGGCGTTGAAAGAAACTGAATTGCCGAAGGCGAAAAGTGGTTTGTTGTTGAAATTGAATTACGACGGCGTTCGGAAAGCGTGGTCCGACCGGGGAACACCGTTCGCCGACGACAGCCCTGTTTCCGATGTATCGGGAAACGATGTCAATACGCGGTTGTCACAAATTGATTTGTTATGGGAGAACAACGGAGGAGGAGTTAGAGAAGCTAGTGTGCAACGTTACAAAGAAAAGCGTCGCACGCGTCTCTTCTCTAAGAAGATAAGATATCAAGTTAGAAAAGTCAACGCAGATCGACGGCCAAGAATGAAGGGACGATTTGTTAGGAGGCTGAATGCTTGCTAG 1188 0.4512 MSSCLSGTGARTYGLDLDLIKSPPCSWSRTSQTSSSPSSTISESSNSPLAIYTTKPRNPRKRPNQTYNEAATLLSTAYPNLFSNPNLKTNPNNKFHKPLLSSEKSYESDSSELLLPFRVFDTSSSFLLHSAIHQSKVNLNFPSEPKPVKPCQSPGEISSMVNLLELNDDGDDFDAESILDEEIEESIDSIMGGRIQEDESKVASSHHLPWIGLGGKIDFRLGLQRAGVRALRHVDEGNWWNFPAVDMLKISPKICSVGGKTPAPVTEKKKKKKVVVVMKQSEALKETELPKAKSGLLLKLNYDGVRKAWSDRGTPFADDSPVSDVSGNDVNTRLSQIDLLWENNGGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNAC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00618 395 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 392 - -
Vivi1g00618 395 ProSiteProfiles CCT domain profile. 349 391 IPR010402 GO:0005515
Vivi1g00618 395 Pfam CCT motif 349 390 IPR010402 GO:0005515
Vivi1g00618 395 MobiDBLite consensus disorder prediction 26 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00618 Vivi-Chr1 13470244 13473025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00618 277 391 C2C2-CO-like Transcription Factor Family AT1G25440 43.846 2.04e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g00618 CCT 5.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00618 - - aprc:113845796 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00618 1 13470244 13473025 Vivi1g00618 1 13470244 13473025 ECH