Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00605 ATGACTTCGTCAAAGGATTCTCCTCCGGCACATCGTGACTTAGAGTCCGGTTCTCTCAATGCTATTACCTGTTCTGCTGATGTGGATGGCGAAGATTACTCAACGGATCCATTTGATATTAGCAGAACAAAGGATGCTTCCATCCAACGACTCAACCGTTGGAGGCAAGCTGCACTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAACACTGAGGAAGATTATAGTTCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGCGAAGAACACAAACAGAACCATAGTACTTCCTTCAAGCTCCAATGGAGAATTTTCAATAGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATACAAATGCTCTAAAGGATTATGGAGGGGTTATAGGGTTGTCAAATTTGTTGAAAACCAATTTAGATAAGGGGACTAAAGGCGATGAAGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGAAAGGACAAAACTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTGTTTTAATGGTCGCTGCGGTGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGCGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTTCTGTTACAGCGATAACCGATTACAAACAATCTCTTCAGTTTCAAGACTTAAATGAGCATAAAAGAAACATACATTTGCAGGTTATTAGATATGGAAGAAGAATCGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCACTCAATATCGGTAACCAGGTTCCTGCCGACGGAATTTTGATCACCGGTCACTCTCTTGCAGTTGATGAATCAAGTATGACCGGGGAGAGCAAGATCGTCAATAAGCATTCTAAGGAACCTTTTTTGATGTCGGGATGTAAAGTTGCAGACGGAAGCGGCACTATGCTAGTAACCGCTGTCGGTATTAATACCGAATGGGGGCTTCTAATGACTAGCATTTCAGAAGACACTAGTGAAGAAACACCTTTGCAGGTTCGCTTGAATGGTCTCGCTACCTTCATCGGTATCGCTGGCCTCGCTGTGGCTATAATTGTTCTAGTTGTGTTACTCGCCAGATATTTCTCCGGGCACACTAAAAATCCCGATGGAAGTGTTCAATTTATAGCGGGAAAGACCTCGGTCGGGGATGCTATTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTACCCGAAGGACTTCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGATCAGCCACAACTATCTGCAGTGATAAGACTGGAACATTGACAATGAATCAGATGACTGTTGTTGAGGCATGTGTTGGTGGAAAGAAGATTTTACCGCCTAATGATAAGTCGCAGCTATCTCCTATCCTCTATTCTTTGCTGATTGAAGGTGCTGCACAGAACACTAATGGAAGTGTTTTTGTACCTGAGAGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTACCAGATCAGAATCATCAATCGTACATGTTTTTCCATTCAACTCGGACAAGAAAAGAGGCGGAGTAGCATTACAAATGGTAACACCTTCTTTGCAGCCCGACGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTTGCCAGCTGTACTCGGTATTTTGATATAAATGATCAGTTGGTGGATATGGATGAAGAAAAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCCAATAGTCTACGTTGTGTTGCCATTGCATATAGACTATTAGATAAAACGGAGAACATTCCAACCGGCGAAGAAGAACTTGCTTGCTGGTCATTACCAGAGGACGATCTTGTTTTACTGGCTATTGTCGGTCTGAAGGATCCTTGTCGACCTGGCGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTGGCGGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGAGCCTTGTCAGACAAAGAGAGAGAAGACATTGTTGAAAAGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCCGTAACCGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTTAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAATGTCATTGCTTCATTTTCCACTGGCGATGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTAGGAGCACTAGCCTTGGCAACTGAATCACCAACAGATCACCTTATGGATCAGCTTCCAGTTGGTAGAAGAGATCCTCTTGTAACAAATATTATGTGGAGGAATCTGCTAATACAGGCTATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAGCATACTGAGTCTAAGGCACGAGATCAACGCCTATGCTGTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTATGTCAAGTATTTAATGAATTTAACGCGCGAAAGCCAGATGAATTCAACATTTTCAAGGGGGTTACCAAAAACTATCTATTTATGGGGATAGTGGGATTAACTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATATGTGTTTTTATAGGATTTATCAGCTGGCCTCTTGCAGTGATTGGAAAACTGATACCAGTACCTACGACTCCCATGAATAACTGTTTTAGAAGATTTCAATGTGGAAGAACTAGAAGAAAGATGGATTCTTAA 3264 0.4151 MTSSKDSPPAHRDLESGSLNAITCSADVDGEDYSTDPFDISRTKDASIQRLNRWRQAALVLNASRRFRYTLDLKKEEERKQTLRKIIVHIRAIQAAYRFKEAAKNTNRTIVLPSSSNGEFSIGQEQLSSISREHDTNALKDYGGVIGLSNLLKTNLDKGTKGDEADLVIRRNAFGSNNYPRKKGQNFLMFIWDACKDLTLIVLMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVISVTAITDYKQSLQFQDLNEHKRNIHLQVIRYGRRIEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAVDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMTSISEDTSEETPLQVRLNGLATFIGIAGLAVAIIVLVVLLARYFSGHTKNPDGSVQFIAGKTSVGDAINGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKILPPNDKSQLSPILYSLLIEGAAQNTNGSVFVPESGNGVEVSGSPTEKAILHWGFQLGMDFEATRSESSIVHVFPFNSDKKRGGVALQMVTPSLQPDAEIHIHWKGAAEIVLASCTRYFDINDQLVDMDEEKMTVLRNVIEDMAANSLRCVAIAYRLLDKTENIPTGEEELACWSLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSLADATEPNIIEGKTFRALSDKEREDIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTINIAALVINVIASFSTGDVPLNTVQLLWVNLIMDTLGALALATESPTDHLMDQLPVGRRDPLVTNIMWRNLLIQAMYQVSVLLILNFQGRSILSLRHEINAYAVKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTIVIQIVIIEFLGNFTKTVKLNWKQWLICVFIGFISWPLAVIGKLIPVPTTPMNNCFRRFQCGRTRRKMDS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 239 361 - -
Vivi1g00605 1087 SFLD Haloacid Dehalogenase 467 852 - -
Vivi1g00605 1087 SMART Cation_ATPase_N_a_2 144 215 IPR004014 -
Vivi1g00605 1087 NCBIfam calcium-translocating P-type ATPase, PMCA-type 122 1064 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 9 plasma membrane-type 339 509 - -
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 694 845 - -
Vivi1g00605 1087 SFLD p-type atpase 467 852 IPR044492 -
Vivi1g00605 1087 SUPERFAMILY HAD-like 483 905 IPR036412 -
Vivi1g00605 1087 Gene3D - 46 102 - -
Vivi1g00605 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 697 IPR023299 GO:0000166
Vivi1g00605 1087 Gene3D - 193 1054 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 824 836 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 693 704 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 715 725 - -
Vivi1g00605 1087 PRINTS P-type cation-transporting ATPase superfamily signature 800 819 - -
Vivi1g00605 1087 PANTHER CATION TRANSPORTING ATPASE 108 1064 - -
Vivi1g00605 1087 Pfam Cation transporter/ATPase, N-terminus 144 210 IPR004014 -
Vivi1g00605 1087 Pfam haloacid dehalogenase-like hydrolase 482 814 - -
Vivi1g00605 1087 Gene3D - 495 700 IPR023299 GO:0000166
Vivi1g00605 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 1064 IPR023298 -
Vivi1g00605 1087 Gene3D - 169 361 - -
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 817 1066 - -
Vivi1g00605 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Vivi1g00605 1087 Pfam Cation transporting ATPase, C-terminus 885 1062 IPR006068 -
Vivi1g00605 1087 Gene3D - 482 845 IPR023214 -
Vivi1g00605 1087 Pfam E1-E2 ATPase 263 463 - -
Vivi1g00605 1087 SUPERFAMILY Calcium ATPase, transduction domain A 263 358 IPR008250 -
Vivi1g00605 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 193 250 - -
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 46 102 - -
Vivi1g00605 1087 NCBIfam HAD-IC family P-type ATPase 422 508 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00605 1087 NCBIfam HAD-IC family P-type ATPase 767 880 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00605 1087 CDD P-type_ATPase_Ca_PMCA-like 170 933 - -
Vivi1g00605 1087 FunFam Calcium-transporting ATPase 495 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00605 Vivi-Chr1 13238258 13246715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00605 1 1074 Primary Pumps ATPases AT5G57110 70.065 0.0 1518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00605 K01537 - gmx:100790157 1665.97