Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00604 ATGACTTCGTCAAAGGATTCTCCTCCGGCACATCGTGACTTAGAGTCCGGTTCTCTCAATGCTATTACCTGTTCTGCTGATGTGGATGGCGAAGATTACTCAACGGATCCATTTGATATTAGCAGAACAAAGGATGCTTCCATCCAACGACTCAACCGTTGGAGGCAAGCTGCACTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAACACTGAGGAAGATTATAGTTCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGCGAAGAACACAAACATACTTCCTTCAAGCTCCAATGGAGAATTTTCAATAGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATACAAATGCTCTAAAGGATTATGGAGGGGTTATAGGGTTGTCAAATTTGTTGAAAACCAATTTAGATAAGGGGACTAAAGGCGATGAAGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGAAAGGACAAAACTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTGTTTTAATGGTCGCTGCGGTGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGCGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTTCTGTTACAGCGATAACCGATTACAAACAATCTCTTCAGTTTCAAGACTTAAATGAGCATAAAAGAAACATACATTTGCAGGTTATTAGATATGGAAGAAGAATCGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCACTCAATATCGGTAACCAGGTTCCTGCCGACGGAATTTTGATCACCGGTCACTCTCTTGCAGTTGATGAATCAAGTATGACCGGGGAGAGCAAGATCGTCAATAAGCATTCTAAGGAACCTTTTTTGATGTCGGGATGTAAAGTTGCAGACGGAAGCGGCACTATGCTAGTAACCGCTGTCGGTATTAATACCGAATGGGGGCTTCTAATGACTAGCATTTCAGAAGACACTAGTGAAGAAACACCTTTGCAGGTTCGCTTGAATGGTCTCGCTACCTTCATCGGTATCGCTGGCCTCGCTGTGGCTATAATTGTTCTAGTTGTGTTACTCGCCAGATATTTCTCCGGGCACACTAAAAATCCCGATGGAAGTGTTCAATTTATAGCGGGAAAGACCTCGGTCGGGGATGCTATTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTACCCGAAGGACTTCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGATCAGCCACAACTATCTGCAGTGATAAGACTGGAACATTGACAATGAATCAGATGACTGTTGTTGAGGCATGTGTTGGTGGAAAGAAGATTTTACCGCCTAATGATAAGTCGCAGCTATCTCCTATCCTCTATTCTTTGCTGATTGAAGGTGCTGCACAGAACACTAATGGAAGTGTTTTTGTACCTGAGAGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTACCAGATCAGAATCATCAATCGTACATGTTTTTCCATTCAACTCGGACAAGAAAAGAGGCGGAGTAGCATTACAAATGGTAACACCTTCTTTGCAGCCCGACGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTTGCCAGCTGTACTCGGTATTTTGATATAAATGATCAGTTGGTGGATATGGATGAAGAAAAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCCAATAGTCTACGTTGTGTTGCCATTGCATATAGACTATTAGATAAAACGGAGAACATTCCAACCGGCGAAGAAGAACTTGCTTGCTGGTCATTACCAGAGGACGATCTTGTTTTACTGGCTATTGTCGGTCTGAAGGATCCTTGTCGACCTGGCGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTGGCGGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGAGCCTTGTCAGACAAAGAGAGAGAAGACATTGTTGAAAAGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCCGTAACCGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTTAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAATGTCATTGCTTCATTTTCCACTGGCGATGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTAGGAGCACTAGCCTTGGCAACTGAATCACCAACAGATCACCTTATGGATCAGCTTCCAGTTGGTAGAAGAGATCCTCTTGTAACAAATATTATGTGGAGGAATCTGCTAATACAGGCTATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAGCATACTGAGTCTAAGGCACGAGATCAACGCCTATGCTGTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTATGTCAAGTATTTAATGAATTTAACGCGCGAAAGCCAGATGAATTCAACATTTTCAAGGGGGTTACCAAAAACTATCTATTTATGGGGATAGTGGGATTAACTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATATGTGTTTTTATAGGATTTATCAGCTGGCCTCTTGCAGTGATTGGAAAACTGATACCAGTACCTACGACTCCCATGAATAACTGTTTTAGAAGATTTCAATGTGGAAGAACTAGAAGAAAGATGGATTCTTAA 3255 0.4151 MTSSKDSPPAHRDLESGSLNAITCSADVDGEDYSTDPFDISRTKDASIQRLNRWRQAALVLNASRRFRYTLDLKKEEERKQTLRKIIVHIRAIQAAYRFKEAAKNTNILPSSSNGEFSIGQEQLSSISREHDTNALKDYGGVIGLSNLLKTNLDKGTKGDEADLVIRRNAFGSNNYPRKKGQNFLMFIWDACKDLTLIVLMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVISVTAITDYKQSLQFQDLNEHKRNIHLQVIRYGRRIEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAVDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMTSISEDTSEETPLQVRLNGLATFIGIAGLAVAIIVLVVLLARYFSGHTKNPDGSVQFIAGKTSVGDAINGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKILPPNDKSQLSPILYSLLIEGAAQNTNGSVFVPESGNGVEVSGSPTEKAILHWGFQLGMDFEATRSESSIVHVFPFNSDKKRGGVALQMVTPSLQPDAEIHIHWKGAAEIVLASCTRYFDINDQLVDMDEEKMTVLRNVIEDMAANSLRCVAIAYRLLDKTENIPTGEEELACWSLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSLADATEPNIIEGKTFRALSDKEREDIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTINIAALVINVIASFSTGDVPLNTVQLLWVNLIMDTLGALALATESPTDHLMDQLPVGRRDPLVTNIMWRNLLIQAMYQVSVLLILNFQGRSILSLRHEINAYAVKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTIVIQIVIIEFLGNFTKTVKLNWKQWLICVFIGFISWPLAVIGKLIPVPTTPMNNCFRRFQCGRTRRKMDS 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00604 1084 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1061 IPR023298 -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 9 plasma membrane-type 336 506 - -
Vivi1g00604 1084 PANTHER CATION TRANSPORTING ATPASE 106 1061 - -
Vivi1g00604 1084 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 694 IPR023299 GO:0000166
Vivi1g00604 1084 Gene3D - 46 102 - -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 691 842 - -
Vivi1g00604 1084 SMART Cation_ATPase_N_a_2 141 212 IPR004014 -
Vivi1g00604 1084 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 46 102 - -
Vivi1g00604 1084 Gene3D - 166 358 - -
Vivi1g00604 1084 SUPERFAMILY HAD-like 480 902 IPR036412 -
Vivi1g00604 1084 Gene3D - 479 842 IPR023214 -
Vivi1g00604 1084 Gene3D - 492 697 IPR023299 GO:0000166
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 690 701 - -
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 821 833 - -
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 712 722 - -
Vivi1g00604 1084 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Vivi1g00604 1084 Pfam haloacid dehalogenase-like hydrolase 479 811 - -
Vivi1g00604 1084 NCBIfam HAD-IC family P-type ATPase 419 505 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00604 1084 NCBIfam HAD-IC family P-type ATPase 764 877 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00604 1084 Pfam Cation transporter/ATPase, N-terminus 141 207 IPR004014 -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 814 1063 - -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 236 358 - -
Vivi1g00604 1084 SFLD C1.7: P-type atpase like 464 849 - -
Vivi1g00604 1084 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Vivi1g00604 1084 CDD P-type_ATPase_Ca_PMCA-like 167 930 - -
Vivi1g00604 1084 SUPERFAMILY Calcium ATPase, transduction domain A 260 355 IPR008250 -
Vivi1g00604 1084 Pfam Cation transporting ATPase, C-terminus 882 1059 IPR006068 -
Vivi1g00604 1084 Gene3D - 190 1051 - -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 492 697 - -
Vivi1g00604 1084 FunFam Calcium-transporting ATPase 190 247 - -
Vivi1g00604 1084 Pfam E1-E2 ATPase 260 460 - -
Vivi1g00604 1084 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 1061 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi1g00604 1084 SFLD p-type atpase 464 849 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00604 Vivi-Chr1 13238254 13246715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00604 1 1071 Primary Pumps ATPases AT5G57110 70.065 0.0 1519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00604 K01537 - gmx:100790157 1666.36