Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00603 ATGACTTCGTCAAAGGATTCTCCTCCGGCACATCGTGACTTAGAGTCCGGTTCTCTCAATGCTATTACCTGTTCTGCTGATGTGGATGGCGAAGATTACTCAACGGATCCATTTGATATTAGCAGAACAAAGGATGCTTCCATCCAACGACTCAACCGTTGGAGGCAAGCTGCACTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAACACTGAGGAAGATTATAGTTCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGCGAAGAACACAAACAGAACCATAGTACTTCCTTCAAGCTCCAATGGAGAATTTTCAATAGGACAAGAGCAACTTTCTTCAATCTCAAGAGAGCATGATACAAATGCTCTAAAGGATTATGGAGGGGTTATAGGGTTGTCAAATTTGTTGAAAACCAATTTAGATAAGGGGACTAAAGGCGATGAAGCTGACTTGGTAATCCGAAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGAAAGGACAAAACTTTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTGTTTTAATGGTCGCTGCGGTGGCTTCATTAGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGCGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTTCTGTTACAGCGATAACCGATTACAAACAATCTCTTCAGTTTCAAGACTTAAATGAGCATAAAAGAAACATACATTTGCAGGTTATTAGATATGGAAGAAGAATCGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCACTCAATATCGGTAACCAGGTTCCTGCCGACGGAATTTTGATCACCGGTCACTCTCTTGCAGTTGATGAATCAAGTATGACCGGGGAGAGCAAGATCGTCAATAAGCATTCTAAGGAACCTTTTTTGATGTCGGGATGTAAAGTTGCAGACGGAAGCGGCACTATGCTAGTAACCGCTGTCGGTATTAATACCGAATGGGGGCTTCTAATGACTAGCATTTCAGAAGACACTAGTGAAGAAACACCTTTGCAGGTTCGCTTGAATGGTCTCGCTACCTTCATCGGTATCGCTGGCCTCGCTGTGGCTATAATTGTTCTAGTTGTGTTACTCGCCAGATATTTCTCCGGGCACACTAAAAATCCCGATGGAAGTGTTCAATTTATAGCGGGAAAGACCTCGGTCGGGGATGCTATTAATGGAGTAGTTAAGATAGCCACTATTGCGGTCACCATTGTAGTGGTTGCAGTACCCGAAGGACTTCCTTTAGCTGTTACCTTAACACTTGCTTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGATCAGCCACAACTATCTGCAGTGATAAGACTGGAACATTGACAATGAATCAGATGACTGTTGTTGAGGCATGTGTTGGTGGAAAGAAGATTTTACCGCCTAATGATAAGTCGCAGCTATCTCCTATCCTCTATTCTTTGCTGATTGAAGGTGCTGCACAGAACACTAATGGAAGTGTTTTTGTACCTGAGAGTGGCAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTACCAGATCAGAATCATCAATCGTACATGTTTTTCCATTCAACTCGGACAAGAAAAGAGGCGGAGTAGCATTACAAATGGTAACACCTTCTTTGCAGCCCGACGCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTTCTTGCCAGCTGTACTCGGTATTTTGATATAAATGATCAGTTGGTGGATATGGATGAAGAAAAGATGACAGTTTTGAGAAATGTCATAGAAGATATGGCTGCCAATAGTCTACGTTGTGTTGCCATTGCATATAGACTATTAGATAAAACGGAGAACATTCCAACCGGCGAAGAAGAACTTGCTTGCTGGTCATTACCAGAGGACGATCTTGTTTTACTGGCTATTGTCGGTCTGAAGGTATGTATTTCCTCCAGAATTAATACTATAATGTCATCTTTGTCTTTTTTAGAATCCATAACCATTCTTGAAGGATCCATTCCTTGTAAATTATGTATCGAAATGCAGGATCCTTGTCGACCTGGCGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGTGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTGGCGGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGAGCCTTGTCAGACAAAGAGAGAGAAGACATTGTTGAAAAGATCTCGGTTATGGGACGGTCGTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCCGTAACCGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGCATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTTAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAATCAATATAGCAGCTCTTGTTATAAATGTCATTGCTTCATTTTCCACTGGCGATGTCCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTAGGAGCACTAGCCTTGGCAACTGAATCACCAACAGATCACCTTATGGATCAGCTTCCAGTTGGTAGAAGAGATCCTCTTGTAACAAATATTATGTGGAGGAATCTGCTAATACAGGCTATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAGCATACTGAGTCTAAGGCACGAGATCAACGCCTATGCTGTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTATGTCAAGTATTTAATGAATTTAACGCGCGAAAGCCAGATGAATTCAACATTTTCAAGGGGGTTACCAAAAACTATCTATTTATGGGGATAGTGGGATTAACTATAGTAATCCAGATTGTCATCATTGAATTTCTTGGAAATTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATATGTGTTTTTATAGGATTTATCAGCTGGCCTCTTGCAGTGATTGGAAAACTGATACCAGTACCTACGACTCCCATGAATAACTGTTTTAGAAGATTTCAATGTGGAAGAACTAGAAGAAAGATGGATTCTTAA 3372 0.4116 MTSSKDSPPAHRDLESGSLNAITCSADVDGEDYSTDPFDISRTKDASIQRLNRWRQAALVLNASRRFRYTLDLKKEEERKQTLRKIIVHIRAIQAAYRFKEAAKNTNRTIVLPSSSNGEFSIGQEQLSSISREHDTNALKDYGGVIGLSNLLKTNLDKGTKGDEADLVIRRNAFGSNNYPRKKGQNFLMFIWDACKDLTLIVLMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVISVTAITDYKQSLQFQDLNEHKRNIHLQVIRYGRRIEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAVDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGINTEWGLLMTSISEDTSEETPLQVRLNGLATFIGIAGLAVAIIVLVVLLARYFSGHTKNPDGSVQFIAGKTSVGDAINGVVKIATIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKILPPNDKSQLSPILYSLLIEGAAQNTNGSVFVPESGNGVEVSGSPTEKAILHWGFQLGMDFEATRSESSIVHVFPFNSDKKRGGVALQMVTPSLQPDAEIHIHWKGAAEIVLASCTRYFDINDQLVDMDEEKMTVLRNVIEDMAANSLRCVAIAYRLLDKTENIPTGEEELACWSLPEDDLVLLAIVGLKVCISSRINTIMSSLSFLESITILEGSIPCKLCIEMQDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSLADATEPNIIEGKTFRALSDKEREDIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTINIAALVINVIASFSTGDVPLNTVQLLWVNLIMDTLGALALATESPTDHLMDQLPVGRRDPLVTNIMWRNLLIQAMYQVSVLLILNFQGRSILSLRHEINAYAVKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTIVIQIVIIEFLGNFTKTVKLNWKQWLICVFIGFISWPLAVIGKLIPVPTTPMNNCFRRFQCGRTRRKMDS 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00603 1123 SMART Cation_ATPase_N_a_2 144 215 IPR004014 -
Vivi1g00603 1123 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Vivi1g00603 1123 NCBIfam HAD-IC family P-type ATPase 422 508 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00603 1123 NCBIfam HAD-IC family P-type ATPase 803 916 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g00603 1123 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 697 IPR023299 GO:0000166
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 495 699 - -
Vivi1g00603 1123 SFLD p-type atpase 467 888 IPR044492 -
Vivi1g00603 1123 SUPERFAMILY HAD-like 483 941 IPR036412 -
Vivi1g00603 1123 Gene3D - 337 507 - -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 9 plasma membrane-type 339 509 - -
Vivi1g00603 1123 CDD P-type_ATPase_Ca_PMCA-like 170 969 - -
Vivi1g00603 1123 Gene3D - 538 698 IPR023299 GO:0000166
Vivi1g00603 1123 PRINTS P-type cation-transporting ATPase superfamily signature 836 855 - -
Vivi1g00603 1123 PRINTS P-type cation-transporting ATPase superfamily signature 751 761 - -
Vivi1g00603 1123 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Vivi1g00603 1123 PRINTS P-type cation-transporting ATPase superfamily signature 860 872 - -
Vivi1g00603 1123 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Vivi1g00603 1123 SFLD Haloacid Dehalogenase 467 888 - -
Vivi1g00603 1123 Pfam Cation transporting ATPase, C-terminus 921 1098 IPR006068 -
Vivi1g00603 1123 PANTHER CATION TRANSPORTING ATPASE 108 1100 - -
Vivi1g00603 1123 Gene3D - 737 881 IPR023214 -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 46 102 - -
Vivi1g00603 1123 Gene3D - 46 102 - -
Vivi1g00603 1123 Pfam haloacid dehalogenase-like hydrolase 731 850 - -
Vivi1g00603 1123 Gene3D - 882 1090 - -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 193 250 - -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 853 1102 - -
Vivi1g00603 1123 Gene3D - 231 336 - -
Vivi1g00603 1123 Pfam E1-E2 ATPase 263 463 - -
Vivi1g00603 1123 SUPERFAMILY Calcium ATPase, transduction domain A 263 358 IPR008250 -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 731 881 - -
Vivi1g00603 1123 FunFam Calcium-transporting ATPase 239 361 - -
Vivi1g00603 1123 Pfam Cation transporter/ATPase, N-terminus 144 210 IPR004014 -
Vivi1g00603 1123 Pfam Cation transport ATPase (P-type) 542 625 - -
Vivi1g00603 1123 ProSitePatterns E1-E2 ATPases phosphorylation site. 487 493 IPR018303 -
Vivi1g00603 1123 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 1100 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00603 Vivi-Chr1 13238253 13246715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00603 1 1110 Primary Pumps ATPases AT5G57110 67.803 0.0 1501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00603 K01537 - gmx:100790157 1647.87