Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00583 ATGTCTTCTTGTTTGAGTGGAACCGGAGCAAGAACTTACGGGTTAGATTTAGATTTAATTAAATCACCACCATGTTCATGGAGTCGAACATCTCAAACATCTTCTTCTCCCTCTTCAACAATCTCCGAATCAAGCAATTCGCCACTCGCCATCTACACCACAAAACCTAGAAACCCTCGAAAACGACCCAACCAAACCTACAACGAAGCAGCAACACTCCTCTCAACCGCTTACCCGAACCTCTTCTCCAATCCGAACCTAAAAACAAACCCAAACAATAAATTCCACAAACCGTTATTATCGTCTGAGAAAAGTTATGAATCCAATTCTTCGGAACTTCTATTACCTTTCCGAGTATTCGACACGTCTTCGTCTTTTCTACTTCACAGTGCAATTCATCAAAGCAAAGTGAATTTGAATTTGAATTTGAATTTCCCGTCGGAGCCGAAGCCGGTGAAACCATGCCAGAGTCCCGGGGAGATAAGTTCCATGGTGAATTTACTCGAATTGAACGACGACGGAGATGATTTCGATGCGGAATCGATTCTCGATGAGGAAATTGAAGAAAGCATCGATAGTATCATGGGAGGGAGAATTCAGGAGGATGAATCTAAGGTAGCATCTTCTCATCATCTTCCATGGATTGGTTTAGGCGGGAAAATCGACTTCCGGTTAGGTTTACAGAGAGCCGGAGTGAGAGCTCTTCGTCATGTCGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCCAAAATTTGCAGTGTCGGTGGTAAAACGCCGGCGCCGGTGACGGAGAAGAAAAAGAAGAAGAAAGTGGTTGTGGTTATGAAACAGAGTGAGGCGTTGAAAGAAACTGAATTGCCGAAGGCGAAAAGTGGTTTGTTGTTGAAATTGAATTACGACGGCGTTCGGAAAGCGTGGTCCGACCGGGGAACACCGTTCGCCGACGACAGCCCTGTTTCCGATGTATCGGGAAACGATGTCAATACGCGGTTGTCACAAATTGATTTGTTATGGGAGAACAACGGAGGAGGAGTTAGAGAAGCTAGTGTGCAACGTTACAAAGAAAAGCGTCGCACGCGTCTCTTCTCTAAGAAGATAAGATATCAAGTTAGAAAAGTCAACGCAGATCGACGGCCAAGAATGAAGGGACGATTTGTTAGGAGGCTGAATGCTTGCTAG 1200 0.4475 MSSCLSGTGARTYGLDLDLIKSPPCSWSRTSQTSSSPSSTISESSNSPLAIYTTKPRNPRKRPNQTYNEAATLLSTAYPNLFSNPNLKTNPNNKFHKPLLSSEKSYESNSSELLLPFRVFDTSSSFLLHSAIHQSKVNLNLNLNFPSEPKPVKPCQSPGEISSMVNLLELNDDGDDFDAESILDEEIEESIDSIMGGRIQEDESKVASSHHLPWIGLGGKIDFRLGLQRAGVRALRHVDEGNWWNFPAVDMLKISPKICSVGGKTPAPVTEKKKKKKVVVVMKQSEALKETELPKAKSGLLLKLNYDGVRKAWSDRGTPFADDSPVSDVSGNDVNTRLSQIDLLWENNGGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNAC 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00583 399 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 396 - -
Vivi1g00583 399 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Vivi1g00583 399 MobiDBLite consensus disorder prediction 26 64 - -
Vivi1g00583 399 Pfam CCT motif 353 394 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00583 Vivi-Chr1 12732261 12735052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00583 281 395 C2C2-CO-like Transcription Factor Family AT1G25440 43.846 2.24e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g00583 CCT 5.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00583 - - aprc:113845796 447.973