Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00554 ATGAGGTATATTAGGACCAACAGTTTCAAGAGACTCTTCTCATTCAAAAAACATTCTTTAGAGAAAGAAAAAGATAACACCTTGAAGATTCTTCCATATGAAGAACAACATTTTCAAAAACCCACTTGGAAATGTTTCTCTTATGAAGAATTATTTGATGCCACCAATGGCTTCAACTCAGAAAACATTGTTGGAAAAGGAGGGTATGCAGAAGTATACAAAGGAACATTGAAAAATGGTGAAGAAATAGCTGTGAAGAGATTAACAAGAACTTCAAGAGATGAGCGAAAAGAGAAAGAGTTTTTGACAGAGATTGGAACAATAGGACATGTTCGTCATTCAAATGTTTTGTCTCTACTAGGTTGTTGTATTGACAATGGACTTTACTTTGTTTTTGAGTTATCCACAACAGGTTCTGTTTCATCTATTCTTCATGATGAAAAGATGGATCCTTTAGATTGGAAAACAAGGTGTAAGATAGTTCTTGGGACGGCGCGTGGACTTCACTACTTGCATAAAGGTTGCAAGAGGAGGATAATTCATAGAGATATCAAAGCATCAAATATTTTGTTGACCAAAGATTTTGAACCACAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGAACATTTGGACATTTGGCACCAGAATACTATTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCATTTGGTGTTTTCTTGCTTGAAGTCATTTCTGGTAGGAAGCCTGTTGATGGGTCTCACCAAAGTTTACATAGTTGGGCTAAACCAATTTTGAACAAGGATGGCATAGAAGAGTTGGTAGATGCAAGGCTTGAAGGGACTTATGATGTGAACCAGTTAAAGAGATTTGCCTTTGCTGCCTCTCTTTGTATTAGGGCATCTTCCACTTGGCGACCTAACATGACTGAGGTATTGGAAATAATAGAGGAGGGAGAGATAGATATAGATAAAGAGAAATGGAAAATGCCAGAGGAAGAAGAAGAACAAGAAGATGAGTTTTGGGGGTTTGAGGATTTGGAATATGAATATGATACTTCATTTTCAATGTCTTTAATTGATTCAATTGAAAGTAATTAA 1128 0.3617 MRYIRTNSFKRLFSFKKHSLEKEKDNTLKILPYEEQHFQKPTWKCFSYEELFDATNGFNSENIVGKGGYAEVYKGTLKNGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKMDPLDWKTRCKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKDGIEELVDARLEGTYDVNQLKRFAFAASLCIRASSTWRPNMTEVLEIIEEGEIDIDKEKWKMPEEEEEQEDEFWGFEDLEYEYDTSFSMSLIDSIESN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00554 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vivi1g00554 375 PANTHER OS08G0249100 PROTEIN 28 357 IPR046958 -
Vivi1g00554 375 Pfam Protein tyrosine and serine/threonine kinase 61 265 IPR001245 GO:0004672|GO:0006468
Vivi1g00554 375 ProSitePatterns Protein kinases ATP-binding region signature. 64 86 IPR017441 GO:0005524
Vivi1g00554 375 ProSiteProfiles Protein kinase domain profile. 58 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00554 375 SMART serkin_6 58 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g00554 375 Gene3D Transferase(Phosphotransferase) domain 1 136 349 - -
Vivi1g00554 375 SUPERFAMILY Protein kinase-like (PK-like) 34 325 IPR011009 -
Vivi1g00554 375 FunFam Putative receptor-like serine/threonine-protein kinase 136 352 - -
Vivi1g00554 375 Gene3D Phosphorylase Kinase; domain 1 29 133 - -
Vivi1g00554 375 FunFam Putative receptor-like serine/threonine-protein kinase 10 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00554 Vivi-Chr1 12069015 12073655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00554 46 334 Trihelix Transcription Factor Family AT4G32710 44.518 3.79e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi1g00554 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00554 - - gmx:100819499 613.994